Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16845

Experiment: R2A with Ferric chloride 1.5625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Ferric chloride 1.5625 mM
3,684,904	+				-1.4
3,684,904	+				+0.1
3,684,904	+				+0.8
3,684,904	+				-0.6
3,684,904	+				-0.8
3,684,904	+				-0.7
3,684,904	+				-0.8
3,684,904	+				+1.2
3,684,904	+				+0.2
3,684,904	+				+0.4
3,684,904	+				-1.1
3,684,905	-				-0.8
3,684,905	-				-0.3
3,684,905	-				+2.0
3,684,905	-				+1.8
3,684,905	-				-0.6
3,684,905	-				-0.9
3,684,905	-				+0.6
3,684,905	-				-2.1
3,684,905	-				+0.3
3,684,905	-				+0.8
3,684,905	-				-1.3
3,684,906	+				-1.2
3,684,906	+				+0.2
3,684,907	-				-0.3
3,684,907	-				-1.2
3,684,907	-				-0.2
3,684,907	-				-1.5
3,684,907	-				-0.7
3,684,907	-				-1.8
3,684,907	-				-0.5
3,685,012	+				-0.3
3,685,013	-				-1.2
3,685,029	+				-2.9
3,685,029	+				-1.9
3,685,029	+				-1.7
3,685,029	+				-1.1
3,685,029	+				+1.4
3,685,029	+				-0.2
3,685,029	+				+2.0
3,685,029	+				-0.2
3,685,030	-				-2.0
3,685,030	-				+0.2
3,685,030	-				+0.0
3,685,030	-				-0.4
3,685,030	-				+0.8
3,685,030	-				-0.4
3,685,030	-				-0.9
3,685,030	-				-0.7
3,685,030	-				-1.1
3,685,030	-				+0.1
3,685,077	+				+0.1
3,685,078	-				+0.8
3,685,078	-				-0.5
3,685,078	-				-0.1
3,685,106	+				+1.1
3,685,106	+				-1.0
3,685,106	+				-2.3
3,685,107	-				+0.4
3,685,107	-				-1.1
3,685,146	+				-1.3
3,685,146	+				-0.9
3,685,147	-				-0.2
3,685,147	-				-0.5
3,685,167	+				+0.2
3,685,167	+				-2.1
3,685,167	+				+0.2
3,685,167	+				-0.2
3,685,167	+				+0.0
3,685,167	+				-2.6
3,685,167	+				+0.2
3,685,167	+				+0.8
3,685,168	-				+1.6
3,685,168	-				-1.7
3,685,168	-				-1.2
3,685,168	-				-1.8
3,685,168	-				+0.2
3,685,168	-				-0.2
3,685,168	-				+0.0
3,685,168	-				+1.0
3,685,168	-				+1.4
3,685,168	-				+0.3
3,685,168	-				-1.0
3,685,168	-				+1.8
3,685,168	-				+0.1
3,685,168	-				-2.1
3,685,196	+		LRK54_RS16840	0.10	-0.5
3,685,196	+		LRK54_RS16840	0.10	-0.2
3,685,196	+		LRK54_RS16840	0.10	-0.8
3,685,196	+		LRK54_RS16840	0.10	+0.0
3,685,196	+		LRK54_RS16840	0.10	-0.1
3,685,196	+		LRK54_RS16840	0.10	+0.8
3,685,196	+		LRK54_RS16840	0.10	-1.0
3,685,196	+		LRK54_RS16840	0.10	-0.0
3,685,196	+		LRK54_RS16840	0.10	-0.2
3,685,196	+		LRK54_RS16840	0.10	+1.0
3,685,197	-		LRK54_RS16840	0.10	-1.1
3,685,197	-		LRK54_RS16840	0.10	+1.3
3,685,197	-		LRK54_RS16840	0.10	-0.8
3,685,197	-		LRK54_RS16840	0.10	-1.8
3,685,197	-		LRK54_RS16840	0.10	+1.8
3,685,197	-		LRK54_RS16840	0.10	+0.2
3,685,197	-		LRK54_RS16840	0.10	-0.8
3,685,197	-		LRK54_RS16840	0.10	+0.6
3,685,228	+		LRK54_RS16840	0.14	-0.1
3,685,228	+		LRK54_RS16840	0.14	+0.5
3,685,228	+		LRK54_RS16840	0.14	-1.8
3,685,228	+		LRK54_RS16840	0.14	+0.8
3,685,228	+		LRK54_RS16840	0.14	-2.3
3,685,228	+		LRK54_RS16840	0.14	+3.4
3,685,228	+		LRK54_RS16840	0.14	-0.5
3,685,228	+		LRK54_RS16840	0.14	-1.5
3,685,228	+		LRK54_RS16840	0.14	-0.1
3,685,228	+		LRK54_RS16840	0.14	-1.0
3,685,228	+		LRK54_RS16840	0.14	-0.4
3,685,228	+		LRK54_RS16840	0.14	-1.9
3,685,228	+		LRK54_RS16840	0.14	-0.8
3,685,228	+		LRK54_RS16840	0.14	-0.4
3,685,228	+		LRK54_RS16840	0.14	+0.8
3,685,228	+		LRK54_RS16840	0.14	-2.0
3,685,228	+		LRK54_RS16840	0.14	-1.3
3,685,228	+		LRK54_RS16840	0.14	+0.2
3,685,228	+		LRK54_RS16840	0.14	-0.2
3,685,228	+		LRK54_RS16840	0.14	-1.8
3,685,228	+		LRK54_RS16840	0.14	-0.2
3,685,228	+		LRK54_RS16840	0.14	-2.8
3,685,228	+		LRK54_RS16840	0.14	-1.3
3,685,228	+		LRK54_RS16840	0.14	+0.4
3,685,228	+		LRK54_RS16840	0.14	-0.4
3,685,228	+		LRK54_RS16840	0.14	-1.0
3,685,228	+		LRK54_RS16840	0.14	-2.1
3,685,228	+		LRK54_RS16840	0.14	-0.8
3,685,228	+		LRK54_RS16840	0.14	-1.8
3,685,228	+		LRK54_RS16840	0.14	+1.8
3,685,228	+		LRK54_RS16840	0.14	-0.2
3,685,228	+		LRK54_RS16840	0.14	+2.4
3,685,228	+		LRK54_RS16840	0.14	-0.2
3,685,228	+		LRK54_RS16840	0.14	+0.0
3,685,228	+		LRK54_RS16840	0.14	-0.1
3,685,228	+		LRK54_RS16840	0.14	+0.2
3,685,228	+		LRK54_RS16840	0.14	-0.2
3,685,228	+		LRK54_RS16840	0.14	+0.4
3,685,228	+		LRK54_RS16840	0.14	-0.2
3,685,229	-		LRK54_RS16840	0.14	-1.2
3,685,229	-		LRK54_RS16840	0.14	-0.3
3,685,229	-		LRK54_RS16840	0.14	+0.8
3,685,229	-		LRK54_RS16840	0.14	-0.3
3,685,229	-		LRK54_RS16840	0.14	+0.0
3,685,229	-		LRK54_RS16840	0.14	-1.3
3,685,229	-		LRK54_RS16840	0.14	-0.6
3,685,229	-		LRK54_RS16840	0.14	-1.2
3,685,229	-		LRK54_RS16840	0.14	-1.5
3,685,229	-		LRK54_RS16840	0.14	-1.6
3,685,229	-		LRK54_RS16840	0.14	-1.3
3,685,229	-		LRK54_RS16840	0.14	-0.8
3,685,229	-		LRK54_RS16840	0.14	+0.0
3,685,229	-		LRK54_RS16840	0.14	-1.2
3,685,229	-		LRK54_RS16840	0.14	-0.1
3,685,229	-		LRK54_RS16840	0.14	-1.8
3,685,229	-		LRK54_RS16840	0.14	+3.1
3,685,229	-		LRK54_RS16840	0.14	+0.2
3,685,229	-		LRK54_RS16840	0.14	-2.3
3,685,229	-		LRK54_RS16840	0.14	-0.6
3,685,229	-		LRK54_RS16840	0.14	-0.9
3,685,229	-		LRK54_RS16840	0.14	-0.7
3,685,229	-		LRK54_RS16840	0.14	-1.1
3,685,229	-		LRK54_RS16840	0.14	-0.2
3,685,229	-		LRK54_RS16840	0.14	+1.6
3,685,229	-		LRK54_RS16840	0.14	-0.8
3,685,229	-		LRK54_RS16840	0.14	-0.8
3,685,229	-		LRK54_RS16840	0.14	+0.8
3,685,229	-		LRK54_RS16840	0.14	-0.8
3,685,276	+		LRK54_RS16840	0.20	-0.4
3,685,360	+		LRK54_RS16840	0.31	+2.2
3,685,360	+		LRK54_RS16840	0.31	+0.5
3,685,360	+		LRK54_RS16840	0.31	+0.2
3,685,361	-		LRK54_RS16840	0.31	-1.5
3,685,361	-		LRK54_RS16840	0.31	+0.6
3,685,361	-		LRK54_RS16840	0.31	+0.2
3,685,495	+		LRK54_RS16840	0.49	+2.6
3,685,565	+		LRK54_RS16840	0.58	-1.5
3,685,566	-		LRK54_RS16840	0.58	-0.7
3,685,587	+		LRK54_RS16840	0.60	+0.2
3,685,587	+		LRK54_RS16840	0.60	+1.8
3,685,587	+		LRK54_RS16840	0.60	+0.6
3,685,587	+		LRK54_RS16840	0.60	-1.2
3,685,587	+		LRK54_RS16840	0.60	-0.5
3,685,587	+		LRK54_RS16840	0.60	+0.2
3,685,588	-		LRK54_RS16840	0.60	-0.9
3,685,588	-		LRK54_RS16840	0.60	-1.0
3,685,588	-		LRK54_RS16840	0.60	+0.2
3,685,603	+		LRK54_RS16840	0.62	-1.2
3,685,603	+		LRK54_RS16840	0.62	-2.0
3,685,604	-		LRK54_RS16840	0.63	-1.2
3,685,631	+		LRK54_RS16840	0.66	+0.1
3,685,631	+		LRK54_RS16840	0.66	+0.2
3,685,631	+		LRK54_RS16840	0.66	-0.2
3,685,658	-		LRK54_RS16840	0.69	+0.8
3,685,659	+		LRK54_RS16840	0.70	-0.5
3,685,660	-		LRK54_RS16840	0.70	-1.2
3,685,660	-		LRK54_RS16840	0.70	-0.1
3,685,660	-		LRK54_RS16840	0.70	-0.7
3,685,687	-		LRK54_RS16840	0.73	+0.1
3,685,739	+		LRK54_RS16840	0.80	-0.9
3,685,827	+				-0.2
3,685,857	+				+0.5
3,685,857	+				+0.1
3,685,858	-				+0.2
3,685,892	+				-0.2
3,685,892	+				+0.0
3,685,892	+				-0.2
3,685,893	-				-1.5
3,685,893	-				-1.5
3,685,893	-				-0.1
3,685,984	+				-0.9
3,685,984	+				-0.5
3,685,984	+				+1.4
3,685,984	+				-1.5
3,685,984	+				-1.0
3,685,984	+				+0.2
3,685,984	+				-2.6
3,685,984	+				-0.6
3,685,985	-				-0.2
3,686,047	+				-1.0
3,686,073	+				-0.9
3,686,073	+				-0.6
3,686,074	-				+2.8
3,686,074	-				-0.7
3,686,074	-				-1.6
3,686,074	-				-1.3
3,686,074	-				-1.0
3,686,074	-				+2.1
3,686,074	-				+1.8
3,686,074	-				-0.8
3,686,077	+				-0.1
3,686,077	+				+1.8
3,686,077	+				-0.6
3,686,104	-				+1.2
3,686,125	+		LRK54_RS16845	0.10	-0.2
3,686,125	+		LRK54_RS16845	0.10	-2.6
3,686,125	+		LRK54_RS16845	0.10	-1.2
3,686,126	-		LRK54_RS16845	0.10	-0.4
3,686,126	-		LRK54_RS16845	0.10	-0.1
3,686,126	-		LRK54_RS16845	0.10	-1.9
3,686,126	-		LRK54_RS16845	0.10	-0.8
3,686,140	+		LRK54_RS16845	0.11	-1.2
3,686,140	+		LRK54_RS16845	0.11	+1.5
3,686,140	+		LRK54_RS16845	0.11	+1.8
3,686,140	+		LRK54_RS16845	0.11	+0.2
3,686,140	+		LRK54_RS16845	0.11	-0.8
3,686,141	-		LRK54_RS16845	0.11	-1.6
3,686,141	-		LRK54_RS16845	0.11	-0.7
3,686,209	+		LRK54_RS16845	0.14	-1.5
3,686,209	+		LRK54_RS16845	0.14	-1.6
3,686,209	+		LRK54_RS16845	0.14	-1.6
3,686,209	+		LRK54_RS16845	0.14	+0.0
3,686,209	+		LRK54_RS16845	0.14	+0.7
3,686,210	-		LRK54_RS16845	0.14	+0.2
3,686,210	-		LRK54_RS16845	0.14	-0.3
3,686,335	+		LRK54_RS16845	0.19	-0.8
3,686,335	+		LRK54_RS16845	0.19	+0.6
3,686,335	+		LRK54_RS16845	0.19	-0.6
3,686,335	+		LRK54_RS16845	0.19	-1.6
3,686,335	+		LRK54_RS16845	0.19	-3.1
3,686,335	+		LRK54_RS16845	0.19	-1.6
3,686,335	+		LRK54_RS16845	0.19	+0.8
3,686,335	+		LRK54_RS16845	0.19	-3.1
3,686,335	+		LRK54_RS16845	0.19	-0.8
3,686,335	+		LRK54_RS16845	0.19	+0.2
3,686,335	+		LRK54_RS16845	0.19	+0.3
3,686,335	+		LRK54_RS16845	0.19	-1.3
3,686,336	-		LRK54_RS16845	0.20	+0.8
3,686,336	-		LRK54_RS16845	0.20	+1.1
3,686,336	-		LRK54_RS16845	0.20	+0.7
3,686,336	-		LRK54_RS16845	0.20	-2.3
3,686,336	-		LRK54_RS16845	0.20	-0.6
3,686,336	-		LRK54_RS16845	0.20	-2.6
3,686,336	-		LRK54_RS16845	0.20	+0.5
3,686,336	-		LRK54_RS16845	0.20	-1.7
3,686,336	-		LRK54_RS16845	0.20	+0.1
3,686,336	-		LRK54_RS16845	0.20	-0.3
3,686,336	-		LRK54_RS16845	0.20	-1.0
3,686,336	-		LRK54_RS16845	0.20	+2.8
3,686,336	-		LRK54_RS16845	0.20	+0.0
3,686,373	+		LRK54_RS16845	0.21	-0.8
3,686,373	+		LRK54_RS16845	0.21	-1.9
3,686,374	-		LRK54_RS16845	0.21	+0.9
3,686,374	-		LRK54_RS16845	0.21	-0.6
3,686,404	+		LRK54_RS16845	0.23	-1.1
3,686,404	+		LRK54_RS16845	0.23	-1.6
3,686,404	+		LRK54_RS16845	0.23	+0.7
3,686,404	+		LRK54_RS16845	0.23	-1.2
3,686,404	+		LRK54_RS16845	0.23	-0.2
3,686,404	+		LRK54_RS16845	0.23	-1.0
3,686,404	+		LRK54_RS16845	0.23	-0.0
3,686,404	+		LRK54_RS16845	0.23	+0.8
3,686,404	+		LRK54_RS16845	0.23	-0.3
3,686,404	+		LRK54_RS16845	0.23	-2.3
3,686,404	+		LRK54_RS16845	0.23	+0.4
3,686,404	+		LRK54_RS16845	0.23	-0.5
3,686,404	+		LRK54_RS16845	0.23	-2.1
3,686,404	+		LRK54_RS16845	0.23	-1.0
3,686,405	-		LRK54_RS16845	0.23	-1.0
3,686,405	-		LRK54_RS16845	0.23	-1.6
3,686,405	-		LRK54_RS16845	0.23	+1.5
3,686,405	-		LRK54_RS16845	0.23	+0.6
3,686,405	-		LRK54_RS16845	0.23	-0.6
3,686,405	-		LRK54_RS16845	0.23	-1.1
3,686,421	+		LRK54_RS16845	0.23	-2.6
3,686,422	-		LRK54_RS16845	0.23	-1.3
3,686,422	-		LRK54_RS16845	0.23	+0.3
3,686,595	+		LRK54_RS16845	0.31	-0.9
3,686,595	+		LRK54_RS16845	0.31	+2.8
3,686,862	-		LRK54_RS16845	0.43	-0.3
3,686,862	-		LRK54_RS16845	0.43	+0.8
3,686,887	+		LRK54_RS16845	0.44	-0.2
3,686,887	+		LRK54_RS16845	0.44	+0.3
3,686,887	+		LRK54_RS16845	0.44	-0.5
3,686,887	+		LRK54_RS16845	0.44	-0.2
3,686,887	+		LRK54_RS16845	0.44	+0.0
3,686,887	+		LRK54_RS16845	0.44	-1.0
3,686,887	+		LRK54_RS16845	0.44	+1.3
3,686,888	-		LRK54_RS16845	0.44	-0.5
3,686,888	-		LRK54_RS16845	0.44	+0.8
3,686,888	-		LRK54_RS16845	0.44	+0.4
3,686,888	-		LRK54_RS16845	0.44	+0.0
3,686,888	-		LRK54_RS16845	0.44	-1.0
3,686,888	-		LRK54_RS16845	0.44	+0.9
3,686,924	+		LRK54_RS16845	0.46	-0.2
3,686,925	-		LRK54_RS16845	0.46	-0.5
3,686,925	-		LRK54_RS16845	0.46	-2.9
3,687,061	+		LRK54_RS16845	0.52	+0.1
3,687,061	+		LRK54_RS16845	0.52	-0.1
3,687,061	+		LRK54_RS16845	0.52	-1.3
3,687,061	+		LRK54_RS16845	0.52	-0.8
3,687,062	-		LRK54_RS16845	0.52	-1.7
3,687,062	-		LRK54_RS16845	0.52	+0.1
3,687,062	-		LRK54_RS16845	0.52	-0.5
3,687,062	-		LRK54_RS16845	0.52	-0.5
3,687,062	-		LRK54_RS16845	0.52	-1.3
3,687,062	-		LRK54_RS16845	0.52	+0.1
3,687,062	-		LRK54_RS16845	0.52	-1.5
3,687,062	-		LRK54_RS16845	0.52	-1.0
3,687,062	-		LRK54_RS16845	0.52	+0.6
3,687,093	+		LRK54_RS16845	0.53	-0.7
3,687,093	+		LRK54_RS16845	0.53	-2.5
3,687,094	-		LRK54_RS16845	0.53	-0.9
3,687,109	-		LRK54_RS16845	0.54	-0.5
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