Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15260

Experiment: R2A with Ferric chloride 1.5625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Ferric chloride 1.5625 mM
3,367,085	+		LRK54_RS15255	0.59	-0.4
3,367,085	+		LRK54_RS15255	0.59	+0.2
3,367,085	+		LRK54_RS15255	0.59	-0.8
3,367,086	-		LRK54_RS15255	0.59	-0.8
3,367,161	+		LRK54_RS15255	0.64	-1.4
3,367,161	+		LRK54_RS15255	0.64	-0.8
3,367,161	+		LRK54_RS15255	0.64	-2.3
3,367,161	+		LRK54_RS15255	0.64	+0.5
3,367,161	+		LRK54_RS15255	0.64	-0.2
3,367,161	+		LRK54_RS15255	0.64	+0.8
3,367,161	+		LRK54_RS15255	0.64	-0.5
3,367,161	+		LRK54_RS15255	0.64	-0.3
3,367,161	+		LRK54_RS15255	0.64	-1.4
3,367,161	+		LRK54_RS15255	0.64	-1.4
3,367,161	+		LRK54_RS15255	0.64	-1.5
3,367,162	-		LRK54_RS15255	0.64	-0.5
3,367,162	-		LRK54_RS15255	0.64	-1.5
3,367,162	-		LRK54_RS15255	0.64	-0.5
3,367,162	-		LRK54_RS15255	0.64	-0.9
3,367,162	-		LRK54_RS15255	0.64	-0.5
3,367,162	-		LRK54_RS15255	0.64	+0.5
3,367,162	-		LRK54_RS15255	0.64	-1.2
3,367,162	-		LRK54_RS15255	0.64	+0.1
3,367,162	-		LRK54_RS15255	0.64	+0.5
3,367,239	+		LRK54_RS15255	0.69	-1.5
3,367,239	+		LRK54_RS15255	0.69	-0.5
3,367,239	+		LRK54_RS15255	0.69	+1.2
3,367,239	+		LRK54_RS15255	0.69	-2.1
3,367,239	+		LRK54_RS15255	0.69	-0.6
3,367,239	+		LRK54_RS15255	0.69	-0.1
3,367,239	+		LRK54_RS15255	0.69	-1.6
3,367,239	+		LRK54_RS15255	0.69	-0.1
3,367,239	+		LRK54_RS15255	0.69	-0.8
3,367,239	+		LRK54_RS15255	0.69	-0.3
3,367,239	+		LRK54_RS15255	0.69	-2.4
3,367,239	+		LRK54_RS15255	0.69	-0.8
3,367,239	+		LRK54_RS15255	0.69	-2.4
3,367,240	-		LRK54_RS15255	0.69	+0.5
3,367,240	-		LRK54_RS15255	0.69	-1.1
3,367,240	-		LRK54_RS15255	0.69	-0.2
3,367,240	-		LRK54_RS15255	0.69	-1.3
3,367,240	-		LRK54_RS15255	0.69	+0.6
3,367,240	-		LRK54_RS15255	0.69	+0.3
3,367,240	-		LRK54_RS15255	0.69	+1.5
3,367,240	-		LRK54_RS15255	0.69	-0.2
3,367,240	-		LRK54_RS15255	0.69	-1.0
3,367,240	-		LRK54_RS15255	0.69	-1.4
3,367,240	-		LRK54_RS15255	0.69	+0.1
3,367,240	-		LRK54_RS15255	0.69	+0.1
3,367,320	+		LRK54_RS15255	0.74	-0.6
3,367,320	+		LRK54_RS15255	0.74	-0.5
3,367,320	+		LRK54_RS15255	0.74	-0.5
3,367,321	-		LRK54_RS15255	0.74	+0.1
3,367,321	-		LRK54_RS15255	0.74	+0.4
3,367,321	-		LRK54_RS15255	0.74	-1.2
3,367,321	-		LRK54_RS15255	0.74	-0.2
3,367,321	-		LRK54_RS15255	0.74	+1.8
3,367,392	+		LRK54_RS15255	0.78	-0.1
3,367,392	+		LRK54_RS15255	0.78	-3.2
3,367,392	+		LRK54_RS15255	0.78	-3.1
3,367,392	+		LRK54_RS15255	0.78	-2.1
3,367,392	+		LRK54_RS15255	0.78	-0.7
3,367,392	+		LRK54_RS15255	0.78	-0.8
3,367,392	+		LRK54_RS15255	0.78	+1.6
3,367,392	+		LRK54_RS15255	0.78	-1.0
3,367,392	+		LRK54_RS15255	0.78	+0.2
3,367,392	+		LRK54_RS15255	0.78	-0.1
3,367,392	+		LRK54_RS15255	0.78	+0.8
3,367,393	-		LRK54_RS15255	0.78	+0.0
3,367,393	-		LRK54_RS15255	0.78	+2.1
3,367,393	-		LRK54_RS15255	0.78	+0.2
3,367,393	-		LRK54_RS15255	0.78	+1.4
3,367,393	-		LRK54_RS15255	0.78	+0.8
3,367,393	-		LRK54_RS15255	0.78	-0.0
3,367,393	-		LRK54_RS15255	0.78	-1.4
3,367,393	-		LRK54_RS15255	0.78	+0.6
3,367,393	-		LRK54_RS15255	0.78	-0.8
3,367,393	-		LRK54_RS15255	0.78	-1.1
3,367,393	-		LRK54_RS15255	0.78	+0.4
3,367,393	-		LRK54_RS15255	0.78	-1.5
3,367,393	-		LRK54_RS15255	0.78	-0.5
3,367,393	-		LRK54_RS15255	0.78	+0.3
3,367,393	-		LRK54_RS15255	0.78	-1.0
3,367,393	-		LRK54_RS15255	0.78	-0.9
3,367,393	-		LRK54_RS15255	0.78	+0.2
3,367,393	-		LRK54_RS15255	0.78	-1.6
3,367,393	-		LRK54_RS15255	0.78	-1.0
3,367,393	-		LRK54_RS15255	0.78	-1.0
3,367,393	-		LRK54_RS15255	0.78	-1.1
3,367,393	-		LRK54_RS15255	0.78	-1.5
3,367,393	-		LRK54_RS15255	0.78	+0.8
3,367,393	-		LRK54_RS15255	0.78	+0.6
3,367,393	-		LRK54_RS15255	0.78	-0.7
3,367,393	-		LRK54_RS15255	0.78	+0.4
3,367,411	+		LRK54_RS15255	0.79	-0.5
3,367,497	+		LRK54_RS15255	0.85	-0.0
3,367,497	+		LRK54_RS15255	0.85	-0.6
3,367,497	+		LRK54_RS15255	0.85	-2.9
3,367,497	+		LRK54_RS15255	0.85	-0.7
3,367,497	+		LRK54_RS15255	0.85	+0.4
3,367,497	+		LRK54_RS15255	0.85	-0.6
3,367,497	+		LRK54_RS15255	0.85	-0.5
3,367,497	+		LRK54_RS15255	0.85	+0.2
3,367,497	+		LRK54_RS15255	0.85	-0.8
3,367,497	+		LRK54_RS15255	0.85	+0.2
3,367,497	+		LRK54_RS15255	0.85	-1.3
3,367,497	+		LRK54_RS15255	0.85	-0.5
3,367,497	+		LRK54_RS15255	0.85	-2.5
3,367,497	+		LRK54_RS15255	0.85	-0.2
3,367,497	+		LRK54_RS15255	0.85	-0.7
3,367,497	+		LRK54_RS15255	0.85	+1.0
3,367,497	+		LRK54_RS15255	0.85	-0.1
3,367,497	+		LRK54_RS15255	0.85	+0.4
3,367,497	+		LRK54_RS15255	0.85	-0.8
3,367,497	+		LRK54_RS15255	0.85	+0.6
3,367,497	+		LRK54_RS15255	0.85	+1.6
3,367,497	+		LRK54_RS15255	0.85	-0.1
3,367,497	+		LRK54_RS15255	0.85	+1.5
3,367,497	+		LRK54_RS15255	0.85	+1.8
3,367,497	+		LRK54_RS15255	0.85	-0.4
3,367,497	+		LRK54_RS15255	0.85	-0.8
3,367,497	+		LRK54_RS15255	0.85	-0.5
3,367,497	+		LRK54_RS15255	0.85	+1.6
3,367,497	+		LRK54_RS15255	0.85	-0.4
3,367,497	+		LRK54_RS15255	0.85	-0.4
3,367,497	+		LRK54_RS15255	0.85	-0.9
3,367,498	-		LRK54_RS15255	0.85	-2.1
3,367,498	-		LRK54_RS15255	0.85	-0.8
3,367,498	-		LRK54_RS15255	0.85	-0.5
3,367,498	-		LRK54_RS15255	0.85	-0.3
3,367,498	-		LRK54_RS15255	0.85	-0.7
3,367,498	-		LRK54_RS15255	0.85	-1.4
3,367,498	-		LRK54_RS15255	0.85	-1.5
3,367,498	-		LRK54_RS15255	0.85	-0.7
3,367,498	-		LRK54_RS15255	0.85	-1.8
3,367,498	-		LRK54_RS15255	0.85	+0.0
3,367,498	-		LRK54_RS15255	0.85	-1.0
3,367,498	-		LRK54_RS15255	0.85	+1.2
3,367,498	-		LRK54_RS15255	0.85	-0.6
3,367,498	-		LRK54_RS15255	0.85	+0.4
3,367,498	-		LRK54_RS15255	0.85	+0.0
3,367,498	-		LRK54_RS15255	0.85	+0.2
3,367,498	-		LRK54_RS15255	0.85	+0.1
3,367,498	-		LRK54_RS15255	0.85	-0.5
3,367,498	-		LRK54_RS15255	0.85	-0.9
3,367,498	-		LRK54_RS15255	0.85	-0.6
3,367,498	-		LRK54_RS15255	0.85	-3.6
3,367,498	-		LRK54_RS15255	0.85	-0.8
3,367,498	-		LRK54_RS15255	0.85	+2.6
3,367,498	-		LRK54_RS15255	0.85	-0.6
3,367,759	+				+0.3
3,367,759	+				+1.6
3,367,759	+				-0.8
3,367,790	+				-0.2
3,367,790	+				+0.5
3,367,791	-				-0.6
3,368,240	+				-1.1
3,368,240	+				+0.6
3,368,240	+				-0.6
3,368,240	+				+0.2
3,368,245	+				-1.8
3,368,246	-				-0.2
3,368,246	-				-0.6
3,368,246	-				+0.2
3,368,246	-				+0.5
3,368,246	-				+0.3
3,368,246	-				-0.6
3,368,246	-				+0.2
3,368,251	+				-2.4
3,368,252	-				+0.1
3,368,252	-				+0.0
3,368,252	-				-0.7
3,368,299	+				-0.5
3,368,299	+				-1.5
3,368,299	+				+0.5
3,368,299	+				+0.3
3,368,299	+				+0.4
3,368,299	+				+0.1
3,368,299	+				-0.6
3,368,299	+				-0.3
3,368,299	+				-2.0
3,368,299	+				+0.8
3,368,299	+				-1.4
3,368,299	+				+0.2
3,368,299	+				+0.3
3,368,299	+				+1.2
3,368,299	+				+0.5
3,368,299	+				-0.0
3,368,299	+				-0.0
3,368,299	+				+0.3
3,368,299	+				-0.4
3,368,300	-				+2.2
3,368,300	-				-0.8
3,368,300	-				-0.5
3,368,300	-				+0.9
3,368,300	-				+1.4
3,368,300	-				+0.9
3,368,300	-				+0.1
3,368,300	-				-0.1
3,368,300	-				+1.1
3,368,300	-				-0.5
3,368,300	-				+1.6
3,368,302	+				-0.7
3,368,302	+				+0.7
3,368,302	+				-2.9
3,368,302	+				+0.4
3,368,302	+				-0.1
3,368,302	+				+1.1
3,368,302	+				-1.5
3,368,302	+				-0.2
3,368,302	+				-0.1
3,368,302	+				+0.7
3,368,302	+				-0.5
3,368,302	+				+0.7
3,368,303	-				-0.8
3,368,303	-				-0.4
3,368,303	-				+0.8
3,368,303	-				+0.4
3,368,303	-				+1.2
3,368,303	-				-0.1
3,368,303	-				+0.0
3,368,303	-				-0.6
3,368,305	+				-0.3
3,368,305	+				-0.5
3,368,306	-				-1.2
3,368,306	-				+1.8
3,368,306	-				+2.6
3,368,306	-				+0.1
3,368,306	-				+0.3
3,368,319	+				+1.8
3,368,319	+				+1.2
3,368,320	-				+0.2
3,368,320	-				+0.2
3,368,356	+				-0.1
3,368,356	+				-0.0
3,368,356	+				+0.5
3,368,357	-				-0.5
3,368,357	-				+0.0
3,368,357	-				-1.4
3,368,359	+				-0.2
3,368,359	+				+0.6
3,368,359	+				+1.8
3,368,359	+				-1.0
3,368,359	+				+1.0
3,368,359	+				-1.3
3,368,360	-				+0.8
3,368,360	-				-0.2
3,368,371	+				+1.2
3,368,371	+				-0.6
3,368,371	+				-2.0
3,368,371	+				-0.6
3,368,371	+				-1.0
3,368,371	+				-0.2
3,368,371	+				-0.5
3,368,371	+				-0.8
3,368,372	-				-0.2
3,368,372	-				+0.9
3,368,390	+				-1.4
3,368,391	-				-0.9
3,368,391	-				-0.2
3,368,701	+		LRK54_RS15265	0.24	-2.4
3,368,701	+		LRK54_RS15265	0.24	-1.0
3,368,701	+		LRK54_RS15265	0.24	-1.4
3,368,701	+		LRK54_RS15265	0.24	-2.3
3,368,701	+		LRK54_RS15265	0.24	-1.6
3,368,701	+		LRK54_RS15265	0.24	-0.5
3,368,701	+		LRK54_RS15265	0.24	-2.4
3,368,701	+		LRK54_RS15265	0.24	-2.1
3,368,701	+		LRK54_RS15265	0.24	-1.5
3,368,702	-		LRK54_RS15265	0.24	-2.2
3,368,702	-		LRK54_RS15265	0.24	-0.5
3,368,702	-		LRK54_RS15265	0.24	-1.2
3,368,702	-		LRK54_RS15265	0.24	-0.6
3,368,702	-		LRK54_RS15265	0.24	+0.8
3,368,702	-		LRK54_RS15265	0.24	-1.4
3,368,702	-		LRK54_RS15265	0.24	-1.1
3,368,702	-		LRK54_RS15265	0.24	-2.1
3,368,702	-		LRK54_RS15265	0.24	-1.0
3,369,095	+		LRK54_RS15265	0.57	-3.1
3,369,095	+		LRK54_RS15265	0.57	-3.6
3,369,095	+		LRK54_RS15265	0.57	-1.0
3,369,095	+		LRK54_RS15265	0.57	-0.8
3,369,095	+		LRK54_RS15265	0.57	-2.5
3,369,095	+		LRK54_RS15265	0.57	-1.1
3,369,095	+		LRK54_RS15265	0.57	-2.2
3,369,095	+		LRK54_RS15265	0.57	-1.0
3,369,095	+		LRK54_RS15265	0.57	+1.8
3,369,095	+		LRK54_RS15265	0.57	-0.2
3,369,095	+		LRK54_RS15265	0.57	-0.5
3,369,095	+		LRK54_RS15265	0.57	-0.5
3,369,095	+		LRK54_RS15265	0.57	-1.4
3,369,095	+		LRK54_RS15265	0.57	-0.3
3,369,095	+		LRK54_RS15265	0.57	-1.5
3,369,095	+		LRK54_RS15265	0.57	-0.5
3,369,095	+		LRK54_RS15265	0.57	-2.9
3,369,095	+		LRK54_RS15265	0.57	-0.8
3,369,095	+		LRK54_RS15265	0.57	-2.3
3,369,095	+		LRK54_RS15265	0.57	-0.5
3,369,095	+		LRK54_RS15265	0.57	-2.4
3,369,095	+		LRK54_RS15265	0.57	+0.8
3,369,095	+		LRK54_RS15265	0.57	-2.4
3,369,095	+		LRK54_RS15265	0.57	-1.2
3,369,095	+		LRK54_RS15265	0.57	+0.5
3,369,095	+		LRK54_RS15265	0.57	-1.6
3,369,095	+		LRK54_RS15265	0.57	-0.8
3,369,096	-		LRK54_RS15265	0.57	+1.8
3,369,096	-		LRK54_RS15265	0.57	-1.6
3,369,096	-		LRK54_RS15265	0.57	-3.6
3,369,096	-		LRK54_RS15265	0.57	-3.2
3,369,096	-		LRK54_RS15265	0.57	-2.4
3,369,096	-		LRK54_RS15265	0.57	-2.3
3,369,096	-		LRK54_RS15265	0.57	-1.0
3,369,096	-		LRK54_RS15265	0.57	-2.0
3,369,096	-		LRK54_RS15265	0.57	-1.6
3,369,096	-		LRK54_RS15265	0.57	-1.5
3,369,096	-		LRK54_RS15265	0.57	-3.2
3,369,096	-		LRK54_RS15265	0.57	+0.2
3,369,096	-		LRK54_RS15265	0.57	-2.4
3,369,096	-		LRK54_RS15265	0.57	-1.7
3,369,096	-		LRK54_RS15265	0.57	-0.1
3,369,096	-		LRK54_RS15265	0.57	-1.2
3,369,096	-		LRK54_RS15265	0.57	-1.2
3,369,096	-		LRK54_RS15265	0.57	-2.2
3,369,096	-		LRK54_RS15265	0.57	-1.2
3,369,096	-		LRK54_RS15265	0.57	-1.5
3,369,096	-		LRK54_RS15265	0.57	-1.9
3,369,096	-		LRK54_RS15265	0.57	-2.5
3,369,096	-		LRK54_RS15265	0.57	-1.5
3,369,096	-		LRK54_RS15265	0.57	-0.5
3,369,096	-		LRK54_RS15265	0.57	-1.2
3,369,096	-		LRK54_RS15265	0.57	-2.6
3,369,096	-		LRK54_RS15265	0.57	-2.6
3,369,096	-		LRK54_RS15265	0.57	+0.2
3,369,096	-		LRK54_RS15265	0.57	-1.2
3,369,096	-		LRK54_RS15265	0.57	-1.4
3,369,143	+		LRK54_RS15265	0.61	+0.1
3,369,143	+		LRK54_RS15265	0.61	-1.2
3,369,143	+		LRK54_RS15265	0.61	-1.8
3,369,144	-		LRK54_RS15265	0.61	-0.2
3,369,144	-		LRK54_RS15265	0.61	-2.9
3,369,144	-		LRK54_RS15265	0.61	-2.0
3,369,144	-		LRK54_RS15265	0.61	-2.4