Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15255

Experiment: R2A with Ferric chloride 1.5625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Ferric chloride 1.5625 mM
3,365,151	-		LRK54_RS15250	0.44	-1.7
3,365,634	+		LRK54_RS15250	0.73	+0.4
3,365,634	+		LRK54_RS15250	0.73	+0.2
3,365,634	+		LRK54_RS15250	0.73	+0.3
3,365,634	+		LRK54_RS15250	0.73	+0.8
3,365,634	+		LRK54_RS15250	0.73	-0.5
3,365,635	-		LRK54_RS15250	0.73	+0.5
3,365,635	-		LRK54_RS15250	0.73	-1.9
3,365,736	+		LRK54_RS15250	0.79	-1.4
3,365,736	+		LRK54_RS15250	0.79	+0.2
3,365,736	+		LRK54_RS15250	0.79	+0.2
3,365,736	+		LRK54_RS15250	0.79	+0.0
3,365,736	+		LRK54_RS15250	0.79	-0.8
3,365,736	+		LRK54_RS15250	0.79	+0.2
3,365,736	+		LRK54_RS15250	0.79	+0.4
3,365,736	+		LRK54_RS15250	0.79	+0.3
3,365,736	+		LRK54_RS15250	0.79	+1.1
3,365,736	+		LRK54_RS15250	0.79	+0.2
3,365,736	+		LRK54_RS15250	0.79	-0.7
3,365,736	+		LRK54_RS15250	0.79	-1.2
3,365,736	+		LRK54_RS15250	0.79	+0.4
3,365,736	+		LRK54_RS15250	0.79	+0.1
3,365,736	+		LRK54_RS15250	0.79	+0.5
3,365,736	+		LRK54_RS15250	0.79	-0.5
3,365,736	+		LRK54_RS15250	0.79	-0.8
3,365,736	+		LRK54_RS15250	0.79	-1.4
3,365,736	+		LRK54_RS15250	0.79	-0.5
3,365,736	+		LRK54_RS15250	0.79	+0.2
3,365,736	+		LRK54_RS15250	0.79	+1.6
3,365,736	+		LRK54_RS15250	0.79	+2.0
3,365,736	+		LRK54_RS15250	0.79	+0.4
3,365,736	+		LRK54_RS15250	0.79	-2.1
3,365,736	+		LRK54_RS15250	0.79	-0.3
3,365,736	+		LRK54_RS15250	0.79	-0.5
3,365,736	+		LRK54_RS15250	0.79	-0.8
3,365,736	+		LRK54_RS15250	0.79	+0.2
3,365,736	+		LRK54_RS15250	0.79	+0.7
3,365,737	-		LRK54_RS15250	0.79	-0.3
3,365,737	-		LRK54_RS15250	0.79	-0.4
3,365,737	-		LRK54_RS15250	0.79	-0.9
3,365,737	-		LRK54_RS15250	0.79	-0.1
3,365,737	-		LRK54_RS15250	0.79	-0.3
3,365,737	-		LRK54_RS15250	0.79	-0.1
3,365,737	-		LRK54_RS15250	0.79	-0.0
3,365,737	-		LRK54_RS15250	0.79	-1.0
3,365,737	-		LRK54_RS15250	0.79	+2.8
3,365,737	-		LRK54_RS15250	0.79	+0.2
3,365,737	-		LRK54_RS15250	0.79	-1.0
3,365,737	-		LRK54_RS15250	0.79	+0.6
3,365,737	-		LRK54_RS15250	0.79	-0.7
3,365,737	-		LRK54_RS15250	0.79	-1.4
3,365,737	-		LRK54_RS15250	0.79	+0.1
3,365,737	-		LRK54_RS15250	0.79	+1.6
3,365,737	-		LRK54_RS15250	0.79	+0.1
3,365,737	-		LRK54_RS15250	0.79	-0.3
3,365,737	-		LRK54_RS15250	0.79	+0.3
3,365,737	-		LRK54_RS15250	0.79	+1.8
3,365,737	-		LRK54_RS15250	0.79	+0.3
3,365,737	-		LRK54_RS15250	0.79	+0.0
3,366,135	+				+1.1
3,366,135	+				-1.7
3,366,135	+				-0.1
3,366,135	+				-1.2
3,366,135	+				+0.2
3,366,135	+				+0.5
3,366,135	+				+0.2
3,366,135	+				+0.8
3,366,135	+				+1.0
3,366,135	+				-1.2
3,366,135	+				+0.2
3,366,135	+				+0.3
3,366,135	+				+0.7
3,366,135	+				-0.7
3,366,135	+				+0.1
3,366,135	+				-1.6
3,366,135	+				-1.8
3,366,135	+				+0.2
3,366,135	+				+0.2
3,366,135	+				-0.2
3,366,135	+				+0.8
3,366,135	+				+0.4
3,366,135	+				+0.5
3,366,135	+				-0.1
3,366,135	+				+0.8
3,366,136	-				+1.1
3,366,136	-				+0.5
3,366,136	-				+1.5
3,366,136	-				+0.2
3,366,136	-				-0.1
3,366,136	-				-0.8
3,366,136	-				-0.5
3,366,136	-				-0.8
3,366,136	-				-1.8
3,366,136	-				-0.5
3,366,136	-				-1.8
3,366,136	-				-0.6
3,366,136	-				-0.6
3,366,136	-				-0.4
3,366,136	-				-0.3
3,366,136	-				-0.7
3,366,136	-				+0.6
3,366,136	-				-0.8
3,366,136	-				+0.6
3,366,136	-				+0.9
3,366,136	-				+0.6
3,366,136	-				+2.3
3,366,153	+				+1.8
3,366,153	+				+1.0
3,366,154	-				-1.5
3,366,154	-				-0.2
3,366,154	-				-0.5
3,366,154	-				+0.0
3,366,264	+				-0.6
3,366,264	+				-0.2
3,366,264	+				+0.8
3,366,264	+				+0.8
3,366,264	+				-2.6
3,366,264	+				-1.0
3,366,264	+				+0.0
3,366,264	+				-1.2
3,366,264	+				+0.2
3,366,264	+				-0.8
3,366,264	+				+1.4
3,366,264	+				+1.8
3,366,264	+				-0.6
3,366,264	+				+0.2
3,366,264	+				-0.2
3,366,265	-				+1.8
3,366,265	-				-1.7
3,366,265	-				-1.9
3,366,265	-				-0.1
3,366,265	-				-2.9
3,366,265	-				-0.3
3,366,265	-				-1.4
3,366,265	-				+0.8
3,366,265	-				-1.4
3,366,265	-				+0.7
3,366,265	-				-1.4
3,366,265	-				-1.5
3,366,267	+				-0.8
3,366,267	+				-0.8
3,366,267	+				-2.9
3,366,267	+				-3.6
3,366,267	+				+2.6
3,366,267	+				-2.7
3,366,267	+				-0.4
3,366,267	+				+0.2
3,366,267	+				-0.7
3,366,268	-				-0.7
3,366,268	-				+0.1
3,366,268	-				-0.9
3,366,268	-				-2.0
3,366,268	-				+0.2
3,366,288	+				-1.4
3,366,288	+				+0.8
3,366,288	+				-0.3
3,366,288	+				-1.4
3,366,289	-				-2.6
3,366,289	-				-1.1
3,366,289	-				+0.7
3,366,289	-				-0.5
3,366,289	-				-2.0
3,366,289	-				-0.4
3,366,456	+		LRK54_RS15255	0.20	-2.0
3,366,457	-		LRK54_RS15255	0.20	-0.8
3,366,477	+		LRK54_RS15255	0.21	-0.1
3,366,477	+		LRK54_RS15255	0.21	-0.8
3,366,477	+		LRK54_RS15255	0.21	+0.0
3,366,477	+		LRK54_RS15255	0.21	+0.7
3,366,477	+		LRK54_RS15255	0.21	+1.3
3,366,477	+		LRK54_RS15255	0.21	-1.1
3,366,477	+		LRK54_RS15255	0.21	-0.4
3,366,477	+		LRK54_RS15255	0.21	-1.8
3,366,477	+		LRK54_RS15255	0.21	-1.9
3,366,477	+		LRK54_RS15255	0.21	+0.0
3,366,477	+		LRK54_RS15255	0.21	-1.9
3,366,477	+		LRK54_RS15255	0.21	-2.6
3,366,477	+		LRK54_RS15255	0.21	-0.2
3,366,477	+		LRK54_RS15255	0.21	-1.4
3,366,477	+		LRK54_RS15255	0.21	-1.0
3,366,477	+		LRK54_RS15255	0.21	-1.6
3,366,478	-		LRK54_RS15255	0.21	-0.5
3,366,478	-		LRK54_RS15255	0.21	-0.4
3,366,478	-		LRK54_RS15255	0.21	+0.9
3,366,478	-		LRK54_RS15255	0.21	-2.6
3,366,478	-		LRK54_RS15255	0.21	-1.2
3,366,478	-		LRK54_RS15255	0.21	+0.8
3,366,478	-		LRK54_RS15255	0.21	-1.0
3,366,478	-		LRK54_RS15255	0.21	-1.9
3,366,478	-		LRK54_RS15255	0.21	+0.2
3,366,478	-		LRK54_RS15255	0.21	-0.4
3,366,478	-		LRK54_RS15255	0.21	-1.1
3,366,478	-		LRK54_RS15255	0.21	-0.2
3,366,478	-		LRK54_RS15255	0.21	+0.4
3,366,478	-		LRK54_RS15255	0.21	-2.7
3,366,478	-		LRK54_RS15255	0.21	+0.5
3,366,478	-		LRK54_RS15255	0.21	-1.2
3,366,478	-		LRK54_RS15255	0.21	+0.8
3,366,478	-		LRK54_RS15255	0.21	+1.3
3,366,478	-		LRK54_RS15255	0.21	-1.0
3,366,478	-		LRK54_RS15255	0.21	-0.8
3,366,478	-		LRK54_RS15255	0.21	-3.4
3,366,478	-		LRK54_RS15255	0.21	+0.0
3,366,588	+		LRK54_RS15255	0.28	-0.2
3,366,588	+		LRK54_RS15255	0.28	-1.0
3,366,588	+		LRK54_RS15255	0.28	-1.3
3,366,588	+		LRK54_RS15255	0.28	-0.2
3,366,588	+		LRK54_RS15255	0.28	-0.8
3,366,588	+		LRK54_RS15255	0.28	-0.2
3,366,588	+		LRK54_RS15255	0.28	-0.2
3,366,589	-		LRK54_RS15255	0.28	-2.1
3,366,589	-		LRK54_RS15255	0.28	+0.1
3,366,589	-		LRK54_RS15255	0.28	-1.1
3,366,589	-		LRK54_RS15255	0.28	-0.2
3,366,589	-		LRK54_RS15255	0.28	-1.0
3,366,589	-		LRK54_RS15255	0.28	-0.2
3,366,589	-		LRK54_RS15255	0.28	-0.1
3,366,589	-		LRK54_RS15255	0.28	-0.2
3,366,589	-		LRK54_RS15255	0.28	-0.5
3,366,589	-		LRK54_RS15255	0.28	-0.8
3,366,873	+		LRK54_RS15255	0.46	-2.6
3,366,874	-		LRK54_RS15255	0.46	+0.6
3,366,874	-		LRK54_RS15255	0.46	-1.2
3,366,874	-		LRK54_RS15255	0.46	-1.2
3,366,891	+		LRK54_RS15255	0.47	-1.7
3,366,891	+		LRK54_RS15255	0.47	-1.2
3,366,891	+		LRK54_RS15255	0.47	-0.6
3,366,891	+		LRK54_RS15255	0.47	-1.4
3,366,891	+		LRK54_RS15255	0.47	+0.2
3,366,891	+		LRK54_RS15255	0.47	-0.7
3,366,891	+		LRK54_RS15255	0.47	-0.1
3,366,891	+		LRK54_RS15255	0.47	+0.9
3,366,891	+		LRK54_RS15255	0.47	-1.2
3,366,891	+		LRK54_RS15255	0.47	-0.0
3,366,892	-		LRK54_RS15255	0.47	+0.2
3,366,892	-		LRK54_RS15255	0.47	-0.0
3,366,892	-		LRK54_RS15255	0.47	-2.2
3,366,892	-		LRK54_RS15255	0.47	-0.3
3,366,892	-		LRK54_RS15255	0.47	-2.8
3,366,892	-		LRK54_RS15255	0.47	-2.2
3,366,892	-		LRK54_RS15255	0.47	+0.1
3,366,892	-		LRK54_RS15255	0.47	-0.2
3,366,892	-		LRK54_RS15255	0.47	+1.4
3,366,892	-		LRK54_RS15255	0.47	+0.6
3,366,892	-		LRK54_RS15255	0.47	-0.9
3,366,892	-		LRK54_RS15255	0.47	+0.8
3,367,085	+		LRK54_RS15255	0.59	-0.4
3,367,085	+		LRK54_RS15255	0.59	+0.2
3,367,085	+		LRK54_RS15255	0.59	-0.8
3,367,086	-		LRK54_RS15255	0.59	-0.8
3,367,161	+		LRK54_RS15255	0.64	-1.4
3,367,161	+		LRK54_RS15255	0.64	-0.8
3,367,161	+		LRK54_RS15255	0.64	-2.3
3,367,161	+		LRK54_RS15255	0.64	+0.5
3,367,161	+		LRK54_RS15255	0.64	-0.2
3,367,161	+		LRK54_RS15255	0.64	+0.8
3,367,161	+		LRK54_RS15255	0.64	-0.5
3,367,161	+		LRK54_RS15255	0.64	-0.3
3,367,161	+		LRK54_RS15255	0.64	-1.4
3,367,161	+		LRK54_RS15255	0.64	-1.4
3,367,161	+		LRK54_RS15255	0.64	-1.5
3,367,162	-		LRK54_RS15255	0.64	-1.5
3,367,162	-		LRK54_RS15255	0.64	-0.5
3,367,162	-		LRK54_RS15255	0.64	-0.9
3,367,162	-		LRK54_RS15255	0.64	-0.5
3,367,162	-		LRK54_RS15255	0.64	+0.5
3,367,162	-		LRK54_RS15255	0.64	-1.2
3,367,162	-		LRK54_RS15255	0.64	+0.1
3,367,162	-		LRK54_RS15255	0.64	+0.5
3,367,239	+		LRK54_RS15255	0.69	-1.5
3,367,239	+		LRK54_RS15255	0.69	-0.5
3,367,239	+		LRK54_RS15255	0.69	+1.2
3,367,239	+		LRK54_RS15255	0.69	-2.1
3,367,239	+		LRK54_RS15255	0.69	-0.6
3,367,239	+		LRK54_RS15255	0.69	-0.1
3,367,239	+		LRK54_RS15255	0.69	-1.6
3,367,239	+		LRK54_RS15255	0.69	-0.1
3,367,239	+		LRK54_RS15255	0.69	-0.8
3,367,239	+		LRK54_RS15255	0.69	-0.3
3,367,239	+		LRK54_RS15255	0.69	-2.4
3,367,239	+		LRK54_RS15255	0.69	-0.8
3,367,239	+		LRK54_RS15255	0.69	-2.4
3,367,240	-		LRK54_RS15255	0.69	+0.5
3,367,240	-		LRK54_RS15255	0.69	-1.1
3,367,240	-		LRK54_RS15255	0.69	-0.2
3,367,240	-		LRK54_RS15255	0.69	-1.3
3,367,240	-		LRK54_RS15255	0.69	+0.6
3,367,240	-		LRK54_RS15255	0.69	+0.3
3,367,240	-		LRK54_RS15255	0.69	+1.5
3,367,240	-		LRK54_RS15255	0.69	-0.2
3,367,240	-		LRK54_RS15255	0.69	-1.0
3,367,240	-		LRK54_RS15255	0.69	-1.4
3,367,240	-		LRK54_RS15255	0.69	+0.1
3,367,240	-		LRK54_RS15255	0.69	+0.1
3,367,320	+		LRK54_RS15255	0.74	-0.6
3,367,320	+		LRK54_RS15255	0.74	-0.5
3,367,320	+		LRK54_RS15255	0.74	-0.5
3,367,321	-		LRK54_RS15255	0.74	+0.1
3,367,321	-		LRK54_RS15255	0.74	+0.4
3,367,321	-		LRK54_RS15255	0.74	-1.2
3,367,321	-		LRK54_RS15255	0.74	-0.2
3,367,321	-		LRK54_RS15255	0.74	+1.8
3,367,392	+		LRK54_RS15255	0.78	-0.1
3,367,392	+		LRK54_RS15255	0.78	-3.2
3,367,392	+		LRK54_RS15255	0.78	-3.1
3,367,392	+		LRK54_RS15255	0.78	-2.1
3,367,392	+		LRK54_RS15255	0.78	-0.7
3,367,392	+		LRK54_RS15255	0.78	-0.8
3,367,392	+		LRK54_RS15255	0.78	+1.6
3,367,392	+		LRK54_RS15255	0.78	-1.0
3,367,392	+		LRK54_RS15255	0.78	+0.2
3,367,392	+		LRK54_RS15255	0.78	-0.1
3,367,392	+		LRK54_RS15255	0.78	+0.8
3,367,393	-		LRK54_RS15255	0.78	+0.0
3,367,393	-		LRK54_RS15255	0.78	+2.1
3,367,393	-		LRK54_RS15255	0.78	+0.2
3,367,393	-		LRK54_RS15255	0.78	+1.4
3,367,393	-		LRK54_RS15255	0.78	+0.8
3,367,393	-		LRK54_RS15255	0.78	-0.0
3,367,393	-		LRK54_RS15255	0.78	-1.4
3,367,393	-		LRK54_RS15255	0.78	+0.6
3,367,393	-		LRK54_RS15255	0.78	-0.8
3,367,393	-		LRK54_RS15255	0.78	-1.1
3,367,393	-		LRK54_RS15255	0.78	+0.4
3,367,393	-		LRK54_RS15255	0.78	-1.5
3,367,393	-		LRK54_RS15255	0.78	-0.5
3,367,393	-		LRK54_RS15255	0.78	+0.3
3,367,393	-		LRK54_RS15255	0.78	-1.0
3,367,393	-		LRK54_RS15255	0.78	-0.9
3,367,393	-		LRK54_RS15255	0.78	+0.2
3,367,393	-		LRK54_RS15255	0.78	-1.6
3,367,393	-		LRK54_RS15255	0.78	-1.0
3,367,393	-		LRK54_RS15255	0.78	-1.0
3,367,393	-		LRK54_RS15255	0.78	-1.1
3,367,393	-		LRK54_RS15255	0.78	-1.5
3,367,393	-		LRK54_RS15255	0.78	+0.8
3,367,393	-		LRK54_RS15255	0.78	+0.6
3,367,393	-		LRK54_RS15255	0.78	-0.7
3,367,393	-		LRK54_RS15255	0.78	+0.4
3,367,411	+		LRK54_RS15255	0.79	-0.5
3,367,497	+		LRK54_RS15255	0.85	-0.0
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