Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05865

Experiment: R2A with Ferric chloride 1.5625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Ferric chloride 1.5625 mM
1,263,964	+		LRK54_RS05860	0.50	-0.9
1,263,964	+		LRK54_RS05860	0.50	+0.5
1,263,964	+		LRK54_RS05860	0.50	-1.3
1,263,964	+		LRK54_RS05860	0.50	+0.8
1,263,964	+		LRK54_RS05860	0.50	+3.2
1,263,964	+		LRK54_RS05860	0.50	+0.3
1,263,964	+		LRK54_RS05860	0.50	-1.6
1,263,964	+		LRK54_RS05860	0.50	+0.3
1,263,964	+		LRK54_RS05860	0.50	-0.0
1,263,964	+		LRK54_RS05860	0.50	-0.1
1,263,964	+		LRK54_RS05860	0.50	+0.3
1,263,964	+		LRK54_RS05860	0.50	+0.8
1,263,964	+		LRK54_RS05860	0.50	+1.8
1,263,965	-		LRK54_RS05860	0.50	-1.3
1,263,965	-		LRK54_RS05860	0.50	+0.2
1,263,965	-		LRK54_RS05860	0.50	-0.2
1,263,965	-		LRK54_RS05860	0.50	-1.0
1,263,965	-		LRK54_RS05860	0.50	+0.9
1,263,965	-		LRK54_RS05860	0.50	-0.8
1,263,965	-		LRK54_RS05860	0.50	-0.4
1,263,965	-		LRK54_RS05860	0.50	-0.4
1,263,965	-		LRK54_RS05860	0.50	-1.3
1,263,965	-		LRK54_RS05860	0.50	-0.6
1,263,965	-		LRK54_RS05860	0.50	-0.8
1,263,965	-		LRK54_RS05860	0.50	-2.2
1,263,965	-		LRK54_RS05860	0.50	+0.7
1,263,979	+		LRK54_RS05860	0.51	-0.9
1,263,979	+		LRK54_RS05860	0.51	+1.0
1,263,980	-		LRK54_RS05860	0.51	+0.6
1,263,980	-		LRK54_RS05860	0.51	-0.9
1,263,980	-		LRK54_RS05860	0.51	-0.1
1,263,980	-		LRK54_RS05860	0.51	+0.3
1,263,980	-		LRK54_RS05860	0.51	-0.8
1,263,980	-		LRK54_RS05860	0.51	+0.2
1,263,980	-		LRK54_RS05860	0.51	-1.3
1,263,980	-		LRK54_RS05860	0.51	+0.2
1,263,980	-		LRK54_RS05860	0.51	-0.6
1,263,980	-		LRK54_RS05860	0.51	-0.9
1,263,980	-		LRK54_RS05860	0.51	-0.9
1,264,140	+		LRK54_RS05860	0.62	-1.2
1,264,140	+		LRK54_RS05860	0.62	-0.7
1,264,140	+		LRK54_RS05860	0.62	-1.4
1,264,141	-		LRK54_RS05860	0.62	-0.6
1,264,141	-		LRK54_RS05860	0.62	-3.3
1,264,141	-		LRK54_RS05860	0.62	-1.3
1,264,141	-		LRK54_RS05860	0.62	-1.5
1,264,141	-		LRK54_RS05860	0.62	-0.8
1,264,141	-		LRK54_RS05860	0.62	+0.6
1,264,141	-		LRK54_RS05860	0.62	+0.6
1,264,147	+		LRK54_RS05860	0.62	+0.4
1,264,147	+		LRK54_RS05860	0.62	+0.2
1,264,147	+		LRK54_RS05860	0.62	+0.4
1,264,148	-		LRK54_RS05860	0.62	+0.2
1,264,148	-		LRK54_RS05860	0.62	-0.3
1,264,148	-		LRK54_RS05860	0.62	-1.5
1,264,148	-		LRK54_RS05860	0.62	+0.4
1,264,237	+		LRK54_RS05860	0.68	-0.3
1,264,237	+		LRK54_RS05860	0.68	+2.5
1,264,237	+		LRK54_RS05860	0.68	+0.2
1,264,237	+		LRK54_RS05860	0.68	-2.3
1,264,237	+		LRK54_RS05860	0.68	-0.5
1,264,237	+		LRK54_RS05860	0.68	+0.6
1,264,237	+		LRK54_RS05860	0.68	-0.2
1,264,237	+		LRK54_RS05860	0.68	+0.3
1,264,237	+		LRK54_RS05860	0.68	-0.2
1,264,237	+		LRK54_RS05860	0.68	-0.8
1,264,237	+		LRK54_RS05860	0.68	+1.2
1,264,237	+		LRK54_RS05860	0.68	+3.4
1,264,237	+		LRK54_RS05860	0.68	+0.4
1,264,237	+		LRK54_RS05860	0.68	+0.3
1,264,237	+		LRK54_RS05860	0.68	-0.4
1,264,237	+		LRK54_RS05860	0.68	-0.3
1,264,237	+		LRK54_RS05860	0.68	+1.5
1,264,237	+		LRK54_RS05860	0.68	+1.3
1,264,237	+		LRK54_RS05860	0.68	+0.7
1,264,237	+		LRK54_RS05860	0.68	-0.3
1,264,237	+		LRK54_RS05860	0.68	+0.2
1,264,237	+		LRK54_RS05860	0.68	+0.8
1,264,237	+		LRK54_RS05860	0.68	+0.2
1,264,237	+		LRK54_RS05860	0.68	-0.6
1,264,237	+		LRK54_RS05860	0.68	-1.1
1,264,237	+		LRK54_RS05860	0.68	-0.4
1,264,237	+		LRK54_RS05860	0.68	-0.2
1,264,238	-		LRK54_RS05860	0.68	-0.0
1,264,238	-		LRK54_RS05860	0.68	-0.4
1,264,238	-		LRK54_RS05860	0.68	+0.2
1,264,238	-		LRK54_RS05860	0.68	-1.1
1,264,238	-		LRK54_RS05860	0.68	-0.3
1,264,238	-		LRK54_RS05860	0.68	-0.6
1,264,238	-		LRK54_RS05860	0.68	+0.3
1,264,238	-		LRK54_RS05860	0.68	-1.0
1,264,238	-		LRK54_RS05860	0.68	-0.5
1,264,238	-		LRK54_RS05860	0.68	-0.2
1,264,238	-		LRK54_RS05860	0.68	-1.5
1,264,238	-		LRK54_RS05860	0.68	-2.2
1,264,238	-		LRK54_RS05860	0.68	+0.2
1,264,238	-		LRK54_RS05860	0.68	-0.4
1,264,238	-		LRK54_RS05860	0.68	+0.1
1,264,238	-		LRK54_RS05860	0.68	-2.2
1,264,238	-		LRK54_RS05860	0.68	-0.5
1,264,238	-		LRK54_RS05860	0.68	+0.2
1,264,238	-		LRK54_RS05860	0.68	-0.0
1,264,282	+		LRK54_RS05860	0.71	-1.2
1,264,282	+		LRK54_RS05860	0.71	-0.5
1,264,282	+		LRK54_RS05860	0.71	-0.2
1,264,283	-		LRK54_RS05860	0.71	+0.6
1,264,283	-		LRK54_RS05860	0.71	+0.6
1,264,283	-		LRK54_RS05860	0.71	-0.2
1,264,283	-		LRK54_RS05860	0.71	-0.4
1,264,462	+		LRK54_RS05860	0.83	+1.1
1,264,462	+		LRK54_RS05860	0.83	-0.3
1,264,462	+		LRK54_RS05860	0.83	+0.1
1,264,462	+		LRK54_RS05860	0.83	+1.8
1,264,462	+		LRK54_RS05860	0.83	+0.2
1,264,462	+		LRK54_RS05860	0.83	-1.3
1,264,463	-		LRK54_RS05860	0.83	-0.8
1,264,463	-		LRK54_RS05860	0.83	+1.8
1,264,463	-		LRK54_RS05860	0.83	+2.1
1,264,463	-		LRK54_RS05860	0.83	-0.8
1,264,486	+		LRK54_RS05860	0.85	+0.2
1,264,486	+		LRK54_RS05860	0.85	+1.2
1,264,486	+		LRK54_RS05860	0.85	+0.4
1,264,487	-		LRK54_RS05860	0.85	-0.2
1,264,487	-		LRK54_RS05860	0.85	+0.6
1,264,501	+		LRK54_RS05860	0.86	-0.0
1,264,501	+		LRK54_RS05860	0.86	-2.3
1,264,501	+		LRK54_RS05860	0.86	-0.8
1,264,502	-		LRK54_RS05860	0.86	-0.2
1,264,502	-		LRK54_RS05860	0.86	-1.5
1,264,502	-		LRK54_RS05860	0.86	-0.6
1,264,502	-		LRK54_RS05860	0.86	-2.7
1,264,502	-		LRK54_RS05860	0.86	+2.2
1,264,510	+		LRK54_RS05860	0.86	+1.0
1,264,510	+		LRK54_RS05860	0.86	-0.1
1,264,510	+		LRK54_RS05860	0.86	+0.6
1,264,510	+		LRK54_RS05860	0.86	-1.2
1,264,510	+		LRK54_RS05860	0.86	-0.0
1,264,510	+		LRK54_RS05860	0.86	-0.5
1,264,510	+		LRK54_RS05860	0.86	+0.2
1,264,510	+		LRK54_RS05860	0.86	+0.7
1,264,511	-		LRK54_RS05860	0.86	+0.9
1,264,511	-		LRK54_RS05860	0.86	+0.7
1,264,511	-		LRK54_RS05860	0.86	-0.2
1,264,511	-		LRK54_RS05860	0.86	-0.7
1,264,511	-		LRK54_RS05860	0.86	+0.6
1,264,511	-		LRK54_RS05860	0.86	-1.2
1,264,511	-		LRK54_RS05860	0.86	+0.8
1,264,511	-		LRK54_RS05860	0.86	+0.2
1,264,511	-		LRK54_RS05860	0.86	-1.3
1,264,570	+				-0.0
1,264,570	+				-0.8
1,264,570	+				-2.9
1,264,570	+				+1.2
1,264,570	+				-1.8
1,264,570	+				+0.4
1,264,570	+				+1.2
1,264,570	+				+0.3
1,264,570	+				+0.0
1,264,570	+				+2.7
1,264,570	+				-1.5
1,264,570	+				-2.2
1,264,570	+				+0.3
1,264,570	+				+0.2
1,264,570	+				-1.0
1,264,570	+				+0.1
1,264,570	+				-1.0
1,264,570	+				-1.0
1,264,570	+				+1.5
1,264,570	+				+1.5
1,264,570	+				+0.2
1,264,570	+				+1.7
1,264,570	+				-0.5
1,264,570	+				+0.5
1,264,571	-				-1.5
1,264,571	-				-0.4
1,264,571	-				+1.1
1,264,571	-				+0.6
1,264,571	-				-0.1
1,264,571	-				-1.5
1,264,571	-				-0.5
1,264,571	-				+0.7
1,264,571	-				+1.5
1,264,571	-				-0.6
1,264,571	-				+0.4
1,264,571	-				+0.1
1,264,571	-				+0.8
1,264,571	-				-0.5
1,264,571	-				-1.2
1,264,571	-				-1.0
1,264,571	-				+0.2
1,264,597	+				+1.3
1,264,597	+				+1.8
1,264,597	+				+0.7
1,264,597	+				-0.8
1,264,597	+				+0.8
1,264,597	+				-0.5
1,264,597	+				+0.6
1,264,597	+				-0.5
1,264,597	+				-0.6
1,264,597	+				-0.3
1,264,597	+				-2.0
1,264,597	+				-0.1
1,264,597	+				+0.3
1,264,597	+				+0.7
1,264,597	+				+0.6
1,264,597	+				-0.1
1,264,597	+				+0.1
1,264,597	+				+1.6
1,264,598	-				-0.7
1,264,598	-				+0.1
1,264,598	-				+0.8
1,264,598	-				-0.9
1,264,598	-				-2.0
1,264,598	-				-0.2
1,264,598	-				-1.4
1,264,598	-				+0.8
1,264,598	-				-1.0
1,264,598	-				+0.1
1,264,601	-				-0.7
1,264,601	-				-0.3
1,264,601	-				-2.5
1,264,672	+				-1.3
1,264,766	+				-0.3
1,264,766	+				-0.5
1,264,766	+				+1.3
1,264,767	-				-1.2
1,264,767	-				-0.6
1,264,767	-				+0.8
1,264,817	+				+0.5
1,264,817	+				-1.0
1,264,818	-				-0.0
1,264,818	-				-0.4
1,264,818	-				+0.5
1,264,857	-				-1.6
1,264,857	-				-1.2
1,264,857	-				-2.0
1,264,874	+				-0.2
1,264,875	-				+1.8
1,264,977	+				+0.8
1,264,978	-				-1.5
1,264,978	-				-1.3
1,264,978	-				-0.8
1,265,178	+		LRK54_RS05865	0.19	-0.7
1,265,178	+		LRK54_RS05865	0.19	-1.6
1,265,178	+		LRK54_RS05865	0.19	-1.2
1,265,178	+		LRK54_RS05865	0.19	+0.6
1,265,178	+		LRK54_RS05865	0.19	+0.2
1,265,178	+		LRK54_RS05865	0.19	+0.4
1,265,178	+		LRK54_RS05865	0.19	-0.4
1,265,178	+		LRK54_RS05865	0.19	-0.5
1,265,178	+		LRK54_RS05865	0.19	+2.4
1,265,178	+		LRK54_RS05865	0.19	-1.0
1,265,179	-		LRK54_RS05865	0.19	-0.2
1,265,179	-		LRK54_RS05865	0.19	+0.1
1,265,179	-		LRK54_RS05865	0.19	+3.1
1,265,179	-		LRK54_RS05865	0.19	+0.5
1,265,179	-		LRK54_RS05865	0.19	-0.8
1,265,179	-		LRK54_RS05865	0.19	+1.0
1,265,179	-		LRK54_RS05865	0.19	+0.6
1,265,179	-		LRK54_RS05865	0.19	+1.8
1,265,179	-		LRK54_RS05865	0.19	+0.9
1,265,179	-		LRK54_RS05865	0.19	-0.4
1,265,179	-		LRK54_RS05865	0.19	+0.7
1,265,179	-		LRK54_RS05865	0.19	-0.3
1,265,179	-		LRK54_RS05865	0.19	-0.2
1,265,179	-		LRK54_RS05865	0.19	-1.3
1,265,179	-		LRK54_RS05865	0.19	+1.0
1,265,241	+		LRK54_RS05865	0.24	-0.3
1,265,241	+		LRK54_RS05865	0.24	-0.2
1,265,241	+		LRK54_RS05865	0.24	+0.8
1,265,241	+		LRK54_RS05865	0.24	+0.5
1,265,241	+		LRK54_RS05865	0.24	-0.0
1,265,241	+		LRK54_RS05865	0.24	-1.0
1,265,241	+		LRK54_RS05865	0.24	-0.5
1,265,241	+		LRK54_RS05865	0.24	-0.3
1,265,241	+		LRK54_RS05865	0.24	-1.2
1,265,241	+		LRK54_RS05865	0.24	+0.8
1,265,241	+		LRK54_RS05865	0.24	+0.9
1,265,241	+		LRK54_RS05865	0.24	-0.1
1,265,241	+		LRK54_RS05865	0.24	+0.8
1,265,241	+		LRK54_RS05865	0.24	+0.7
1,265,241	+		LRK54_RS05865	0.24	+1.4
1,265,241	+		LRK54_RS05865	0.24	-0.1
1,265,242	-		LRK54_RS05865	0.24	+1.1
1,265,242	-		LRK54_RS05865	0.24	-2.0
1,265,242	-		LRK54_RS05865	0.24	-1.5
1,265,242	-		LRK54_RS05865	0.24	+1.1
1,265,242	-		LRK54_RS05865	0.24	-0.1
1,265,242	-		LRK54_RS05865	0.24	-1.5
1,265,242	-		LRK54_RS05865	0.24	+0.2
1,265,242	-		LRK54_RS05865	0.24	+1.4
1,265,242	-		LRK54_RS05865	0.24	+1.2
1,265,242	-		LRK54_RS05865	0.24	+0.8
1,265,242	-		LRK54_RS05865	0.24	-0.0
1,265,250	-		LRK54_RS05865	0.24	-0.5
1,265,250	-		LRK54_RS05865	0.24	-0.6
1,265,655	+		LRK54_RS05865	0.51	+0.8
1,265,655	+		LRK54_RS05865	0.51	-0.2
1,265,655	+		LRK54_RS05865	0.51	-0.7
1,265,655	+		LRK54_RS05865	0.51	-0.9
1,265,656	-		LRK54_RS05865	0.51	+0.3
1,265,656	-		LRK54_RS05865	0.51	+1.0
1,265,656	-		LRK54_RS05865	0.51	-0.8
1,265,656	-		LRK54_RS05865	0.51	+0.2
1,265,694	+		LRK54_RS05865	0.54	+0.8
1,265,694	+		LRK54_RS05865	0.54	+0.4
1,265,694	+		LRK54_RS05865	0.54	-0.3
1,265,694	+		LRK54_RS05865	0.54	-1.2
1,265,694	+		LRK54_RS05865	0.54	+0.5
1,265,694	+		LRK54_RS05865	0.54	-0.2
1,265,694	+		LRK54_RS05865	0.54	+0.0
1,265,694	+		LRK54_RS05865	0.54	-0.5
1,265,694	+		LRK54_RS05865	0.54	-0.9
1,265,694	+		LRK54_RS05865	0.54	-0.8
1,265,694	+		LRK54_RS05865	0.54	+0.8
1,265,694	+		LRK54_RS05865	0.54	+1.6
1,265,694	+		LRK54_RS05865	0.54	-0.4
1,265,694	+		LRK54_RS05865	0.54	+0.3
1,265,694	+		LRK54_RS05865	0.54	+0.1
1,265,694	+		LRK54_RS05865	0.54	-0.2
1,265,695	-		LRK54_RS05865	0.54	+0.0
1,265,695	-		LRK54_RS05865	0.54	+0.6
1,265,695	-		LRK54_RS05865	0.54	+0.5
1,265,695	-		LRK54_RS05865	0.54	-1.0
1,265,695	-		LRK54_RS05865	0.54	-0.1
1,265,695	-		LRK54_RS05865	0.54	-0.8
1,265,695	-		LRK54_RS05865	0.54	+0.5
1,265,695	-		LRK54_RS05865	0.54	-0.5
1,265,695	-		LRK54_RS05865	0.54	+0.1
1,265,695	-		LRK54_RS05865	0.54	+0.6
1,265,695	-		LRK54_RS05865	0.54	-0.0
1,265,695	-		LRK54_RS05865	0.54	-0.6
1,265,695	-		LRK54_RS05865	0.54	-0.4
1,265,695	-		LRK54_RS05865	0.54	-1.0
1,265,695	-		LRK54_RS05865	0.54	-1.2
1,265,695	-		LRK54_RS05865	0.54	-2.4
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