Experiment: R2A with Ferric chloride 1.5625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS01140 and LRK54_RS01145 are separated by 174 nucleotides LRK54_RS01145 and LRK54_RS01150 overlap by 10 nucleotides LRK54_RS01150 and LRK54_RS01155 overlap by 4 nucleotides
LRK54_RS01140: LRK54_RS01140 - EAL domain-containing protein, at 253,236 to 256,079
_RS01140
LRK54_RS01145: LRK54_RS01145 - PIG-L family deacetylase, at 256,254 to 257,246
_RS01145
LRK54_RS01150: LRK54_RS01150 - DNA polymerase III subunit delta', at 257,237 to 258,172
_RS01150
LRK54_RS01155: LRK54_RS01155 - dTMP kinase, at 258,169 to 258,810
_RS01155
Position (kb) 256
257
258 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 255.358 kb on - strand, within LRK54_RS01140 at 255.479 kb on + strand, within LRK54_RS01140 at 255.479 kb on + strand, within LRK54_RS01140 at 255.479 kb on + strand, within LRK54_RS01140 at 255.480 kb on - strand, within LRK54_RS01140 at 255.480 kb on - strand, within LRK54_RS01140 at 255.660 kb on + strand, within LRK54_RS01140 at 255.660 kb on + strand, within LRK54_RS01140 at 255.660 kb on + strand, within LRK54_RS01140 at 255.660 kb on + strand, within LRK54_RS01140 at 255.660 kb on + strand, within LRK54_RS01140 at 255.660 kb on + strand, within LRK54_RS01140 at 255.660 kb on + strand, within LRK54_RS01140 at 255.660 kb on + strand, within LRK54_RS01140 at 255.661 kb on - strand, within LRK54_RS01140 at 255.661 kb on - strand, within LRK54_RS01140 at 255.661 kb on - strand, within LRK54_RS01140 at 255.661 kb on - strand, within LRK54_RS01140 at 255.661 kb on - strand, within LRK54_RS01140 at 255.661 kb on - strand, within LRK54_RS01140 at 255.661 kb on - strand, within LRK54_RS01140 at 255.661 kb on - strand, within LRK54_RS01140 at 255.661 kb on - strand, within LRK54_RS01140 at 255.661 kb on - strand, within LRK54_RS01140 at 255.661 kb on - strand, within LRK54_RS01140 at 255.661 kb on - strand, within LRK54_RS01140 at 255.661 kb on - strand, within LRK54_RS01140 at 255.661 kb on - strand, within LRK54_RS01140 at 255.702 kb on + strand, within LRK54_RS01140 at 255.720 kb on + strand, within LRK54_RS01140 at 255.720 kb on + strand, within LRK54_RS01140 at 255.720 kb on + strand, within LRK54_RS01140 at 255.720 kb on + strand, within LRK54_RS01140 at 255.720 kb on + strand, within LRK54_RS01140 at 255.720 kb on + strand, within LRK54_RS01140 at 255.720 kb on + strand, within LRK54_RS01140 at 255.720 kb on + strand, within LRK54_RS01140 at 255.720 kb on + strand, within LRK54_RS01140 at 255.720 kb on + strand, within LRK54_RS01140 at 255.720 kb on + strand, within LRK54_RS01140 at 255.720 kb on + strand, within LRK54_RS01140 at 255.720 kb on + strand, within LRK54_RS01140 at 255.721 kb on - strand, within LRK54_RS01140 at 255.721 kb on - strand, within LRK54_RS01140 at 255.721 kb on - strand, within LRK54_RS01140 at 255.721 kb on - strand, within LRK54_RS01140 at 255.721 kb on - strand, within LRK54_RS01140 at 255.721 kb on - strand, within LRK54_RS01140 at 255.721 kb on - strand, within LRK54_RS01140 at 255.721 kb on - strand, within LRK54_RS01140 at 255.721 kb on - strand, within LRK54_RS01140 at 255.721 kb on - strand, within LRK54_RS01140 at 255.721 kb on - strand, within LRK54_RS01140 at 255.721 kb on - strand, within LRK54_RS01140 at 255.721 kb on - strand, within LRK54_RS01140 at 255.721 kb on - strand, within LRK54_RS01140 at 255.721 kb on - strand, within LRK54_RS01140 at 255.736 kb on + strand, within LRK54_RS01140 at 255.736 kb on + strand, within LRK54_RS01140 at 255.736 kb on + strand, within LRK54_RS01140 at 255.736 kb on + strand, within LRK54_RS01140 at 255.736 kb on + strand, within LRK54_RS01140 at 255.736 kb on + strand, within LRK54_RS01140 at 255.736 kb on + strand, within LRK54_RS01140 at 255.736 kb on + strand, within LRK54_RS01140 at 255.736 kb on + strand, within LRK54_RS01140 at 255.736 kb on + strand, within LRK54_RS01140 at 255.736 kb on + strand, within LRK54_RS01140 at 255.736 kb on + strand, within LRK54_RS01140 at 255.736 kb on + strand, within LRK54_RS01140 at 255.736 kb on + strand, within LRK54_RS01140 at 255.736 kb on + strand, within LRK54_RS01140 at 255.736 kb on + strand, within LRK54_RS01140 at 255.737 kb on - strand, within LRK54_RS01140 at 255.737 kb on - strand, within LRK54_RS01140 at 255.737 kb on - strand, within LRK54_RS01140 at 255.737 kb on - strand, within LRK54_RS01140 at 255.737 kb on - strand, within LRK54_RS01140 at 255.737 kb on - strand, within LRK54_RS01140 at 255.737 kb on - strand, within LRK54_RS01140 at 255.737 kb on - strand, within LRK54_RS01140 at 255.737 kb on - strand, within LRK54_RS01140 at 255.737 kb on - strand, within LRK54_RS01140 at 255.737 kb on - strand, within LRK54_RS01140 at 255.848 kb on - strand at 255.954 kb on + strand at 255.954 kb on + strand at 255.954 kb on + strand at 255.954 kb on + strand at 255.954 kb on + strand at 255.954 kb on + strand at 255.955 kb on - strand at 255.955 kb on - strand at 255.973 kb on + strand at 255.973 kb on + strand at 255.973 kb on + strand at 255.973 kb on + strand at 255.973 kb on + strand at 255.973 kb on + strand at 255.974 kb on - strand at 255.974 kb on - strand at 255.974 kb on - strand at 255.974 kb on - strand at 255.974 kb on - strand at 255.974 kb on - strand at 255.974 kb on - strand at 255.974 kb on - strand at 255.974 kb on - strand at 255.974 kb on - strand at 255.974 kb on - strand at 255.974 kb on - strand at 255.974 kb on - strand at 255.974 kb on - strand at 255.974 kb on - strand at 255.974 kb on - strand at 255.974 kb on - strand at 255.974 kb on - strand at 256.033 kb on + strand at 256.033 kb on + strand at 256.033 kb on + strand at 256.034 kb on - strand at 256.034 kb on - strand at 256.034 kb on - strand at 256.034 kb on - strand at 256.034 kb on - strand at 256.034 kb on - strand at 256.034 kb on - strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.097 kb on + strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.098 kb on - strand at 256.121 kb on + strand at 256.122 kb on - strand at 256.122 kb on - strand at 256.122 kb on - strand at 256.122 kb on - strand at 256.122 kb on - strand at 256.122 kb on - strand at 256.122 kb on - strand at 256.246 kb on + strand at 256.247 kb on - strand at 256.247 kb on - strand at 256.247 kb on - strand at 256.247 kb on - strand at 256.247 kb on - strand at 256.247 kb on - strand at 256.694 kb on + strand, within LRK54_RS01145 at 256.705 kb on + strand, within LRK54_RS01145 at 256.705 kb on + strand, within LRK54_RS01145 at 256.705 kb on + strand, within LRK54_RS01145 at 256.705 kb on + strand, within LRK54_RS01145 at 256.705 kb on + strand, within LRK54_RS01145 at 256.705 kb on + strand, within LRK54_RS01145 at 256.705 kb on + strand, within LRK54_RS01145 at 256.705 kb on + strand, within LRK54_RS01145 at 256.705 kb on + strand, within LRK54_RS01145 at 256.706 kb on - strand, within LRK54_RS01145 at 256.706 kb on - strand, within LRK54_RS01145 at 256.706 kb on - strand, within LRK54_RS01145 at 256.706 kb on - strand, within LRK54_RS01145 at 256.706 kb on - strand, within LRK54_RS01145 at 256.706 kb on - strand, within LRK54_RS01145 at 256.706 kb on - strand, within LRK54_RS01145 at 256.706 kb on - strand, within LRK54_RS01145 at 256.706 kb on - strand, within LRK54_RS01145 at 256.706 kb on - strand, within LRK54_RS01145 at 256.706 kb on - strand, within LRK54_RS01145 at 256.706 kb on - strand, within LRK54_RS01145 at 256.706 kb on - strand, within LRK54_RS01145 at 256.706 kb on - strand, within LRK54_RS01145 at 256.812 kb on + strand, within LRK54_RS01145 at 256.812 kb on + strand, within LRK54_RS01145 at 256.812 kb on + strand, within LRK54_RS01145 at 256.812 kb on + strand, within LRK54_RS01145 at 256.812 kb on + strand, within LRK54_RS01145 at 256.813 kb on - strand, within LRK54_RS01145 at 256.813 kb on - strand, within LRK54_RS01145 at 256.813 kb on - strand, within LRK54_RS01145 at 256.813 kb on - strand, within LRK54_RS01145
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Ferric chloride 1.5625 mM remove 255,358 - LRK54_RS01140 0.75 -0.3 255,479 + LRK54_RS01140 0.79 -0.7 255,479 + LRK54_RS01140 0.79 +0.6 255,479 + LRK54_RS01140 0.79 -1.0 255,480 - LRK54_RS01140 0.79 +1.0 255,480 - LRK54_RS01140 0.79 -0.5 255,660 + LRK54_RS01140 0.85 -0.4 255,660 + LRK54_RS01140 0.85 -1.2 255,660 + LRK54_RS01140 0.85 -0.7 255,660 + LRK54_RS01140 0.85 -1.3 255,660 + LRK54_RS01140 0.85 +0.5 255,660 + LRK54_RS01140 0.85 -0.3 255,660 + LRK54_RS01140 0.85 -0.2 255,660 + LRK54_RS01140 0.85 -0.2 255,661 - LRK54_RS01140 0.85 -0.5 255,661 - LRK54_RS01140 0.85 +0.5 255,661 - LRK54_RS01140 0.85 -1.3 255,661 - LRK54_RS01140 0.85 -1.1 255,661 - LRK54_RS01140 0.85 -1.7 255,661 - LRK54_RS01140 0.85 -0.0 255,661 - LRK54_RS01140 0.85 -1.7 255,661 - LRK54_RS01140 0.85 +1.8 255,661 - LRK54_RS01140 0.85 +0.8 255,661 - LRK54_RS01140 0.85 -0.8 255,661 - LRK54_RS01140 0.85 +0.8 255,661 - LRK54_RS01140 0.85 -1.1 255,661 - LRK54_RS01140 0.85 -1.9 255,661 - LRK54_RS01140 0.85 +0.6 255,702 + LRK54_RS01140 0.87 -0.6 255,720 + LRK54_RS01140 0.87 -1.0 255,720 + LRK54_RS01140 0.87 -0.1 255,720 + LRK54_RS01140 0.87 -1.0 255,720 + LRK54_RS01140 0.87 -0.2 255,720 + LRK54_RS01140 0.87 +1.5 255,720 + LRK54_RS01140 0.87 -0.5 255,720 + LRK54_RS01140 0.87 +1.8 255,720 + LRK54_RS01140 0.87 +0.4 255,720 + LRK54_RS01140 0.87 -1.0 255,720 + LRK54_RS01140 0.87 +1.5 255,720 + LRK54_RS01140 0.87 -1.4 255,720 + LRK54_RS01140 0.87 -0.7 255,720 + LRK54_RS01140 0.87 +0.6 255,721 - LRK54_RS01140 0.87 +1.7 255,721 - LRK54_RS01140 0.87 -0.7 255,721 - LRK54_RS01140 0.87 -0.7 255,721 - LRK54_RS01140 0.87 -1.4 255,721 - LRK54_RS01140 0.87 -0.0 255,721 - LRK54_RS01140 0.87 +0.5 255,721 - LRK54_RS01140 0.87 -0.3 255,721 - LRK54_RS01140 0.87 -1.0 255,721 - LRK54_RS01140 0.87 -1.0 255,721 - LRK54_RS01140 0.87 -0.3 255,721 - LRK54_RS01140 0.87 -0.2 255,721 - LRK54_RS01140 0.87 +0.1 255,721 - LRK54_RS01140 0.87 +0.7 255,721 - LRK54_RS01140 0.87 -0.5 255,721 - LRK54_RS01140 0.87 +0.4 255,736 + LRK54_RS01140 0.88 -1.2 255,736 + LRK54_RS01140 0.88 +0.6 255,736 + LRK54_RS01140 0.88 -0.2 255,736 + LRK54_RS01140 0.88 -1.6 255,736 + LRK54_RS01140 0.88 -1.0 255,736 + LRK54_RS01140 0.88 +3.0 255,736 + LRK54_RS01140 0.88 -2.5 255,736 + LRK54_RS01140 0.88 +0.0 255,736 + LRK54_RS01140 0.88 -0.5 255,736 + LRK54_RS01140 0.88 -0.5 255,736 + LRK54_RS01140 0.88 +0.0 255,736 + LRK54_RS01140 0.88 -0.2 255,736 + LRK54_RS01140 0.88 -2.9 255,736 + LRK54_RS01140 0.88 -0.6 255,736 + LRK54_RS01140 0.88 -1.2 255,736 + LRK54_RS01140 0.88 +1.8 255,737 - LRK54_RS01140 0.88 +2.2 255,737 - LRK54_RS01140 0.88 +0.7 255,737 - LRK54_RS01140 0.88 +0.9 255,737 - LRK54_RS01140 0.88 -0.2 255,737 - LRK54_RS01140 0.88 +0.4 255,737 - LRK54_RS01140 0.88 -0.4 255,737 - LRK54_RS01140 0.88 -0.4 255,737 - LRK54_RS01140 0.88 -0.9 255,737 - LRK54_RS01140 0.88 +0.4 255,737 - LRK54_RS01140 0.88 +0.3 255,737 - LRK54_RS01140 0.88 +1.4 255,848 - +0.7 255,954 + +0.3 255,954 + -1.0 255,954 + +0.1 255,954 + +3.4 255,954 + -0.2 255,954 + +0.5 255,955 - -0.7 255,955 - +0.8 255,973 + -0.8 255,973 + +0.7 255,973 + -1.0 255,973 + +0.3 255,973 + +0.8 255,973 + +0.8 255,974 - -0.0 255,974 - -1.2 255,974 - -0.4 255,974 - -0.8 255,974 - -0.1 255,974 - +0.6 255,974 - -0.2 255,974 - +0.4 255,974 - +0.2 255,974 - +1.1 255,974 - -0.3 255,974 - +0.8 255,974 - -0.1 255,974 - +0.3 255,974 - -2.5 255,974 - -0.3 255,974 - +0.8 255,974 - -1.4 256,033 + +0.5 256,033 + -0.2 256,033 + -1.0 256,034 - +0.7 256,034 - +0.3 256,034 - -2.0 256,034 - +0.8 256,034 - +0.5 256,034 - +0.3 256,034 - +0.1 256,097 + -0.9 256,097 + +0.1 256,097 + +0.0 256,097 + +0.3 256,097 + +0.7 256,097 + +0.0 256,097 + -1.1 256,097 + +0.4 256,097 + -0.1 256,097 + -1.0 256,097 + -0.1 256,097 + -1.6 256,097 + +0.8 256,097 + +0.1 256,097 + -1.7 256,097 + +0.4 256,097 + -2.2 256,097 + -0.2 256,097 + +0.6 256,097 + +0.0 256,097 + +1.0 256,097 + +1.8 256,097 + -0.5 256,097 + +1.8 256,097 + +0.1 256,097 + +0.7 256,097 + -0.7 256,097 + +2.1 256,097 + +0.3 256,097 + -0.9 256,097 + -2.9 256,097 + -1.9 256,097 + +0.8 256,097 + -0.7 256,097 + -1.5 256,097 + -3.0 256,097 + +0.8 256,097 + -0.6 256,098 - +0.3 256,098 - +0.5 256,098 - -1.4 256,098 - -2.2 256,098 - -0.2 256,098 - +1.8 256,098 - -0.9 256,098 - -0.0 256,098 - +1.8 256,098 - -1.2 256,098 - +0.4 256,098 - +1.0 256,098 - +0.3 256,098 - -0.2 256,098 - +0.0 256,098 - -1.6 256,098 - +1.4 256,098 - -0.7 256,098 - +1.6 256,098 - -1.2 256,098 - -0.3 256,098 - +2.7 256,098 - +1.1 256,098 - -1.0 256,098 - -0.2 256,098 - -1.3 256,098 - +0.3 256,098 - +1.3 256,098 - -0.1 256,098 - +1.2 256,098 - +1.2 256,098 - -0.7 256,098 - +0.5 256,098 - -0.2 256,098 - +0.3 256,121 + -0.1 256,122 - +0.9 256,122 - -0.7 256,122 - +0.4 256,122 - +0.7 256,122 - -1.9 256,122 - -0.2 256,122 - +0.0 256,246 + -0.7 256,247 - +2.8 256,247 - +0.0 256,247 - -1.7 256,247 - -0.2 256,247 - +1.2 256,247 - +0.9 256,694 + LRK54_RS01145 0.44 +0.3 256,705 + LRK54_RS01145 0.45 -1.2 256,705 + LRK54_RS01145 0.45 +3.0 256,705 + LRK54_RS01145 0.45 -0.7 256,705 + LRK54_RS01145 0.45 -1.5 256,705 + LRK54_RS01145 0.45 +0.4 256,705 + LRK54_RS01145 0.45 -0.5 256,705 + LRK54_RS01145 0.45 -0.2 256,705 + LRK54_RS01145 0.45 +0.5 256,705 + LRK54_RS01145 0.45 +1.1 256,706 - LRK54_RS01145 0.46 -1.1 256,706 - LRK54_RS01145 0.46 -1.6 256,706 - LRK54_RS01145 0.46 -0.5 256,706 - LRK54_RS01145 0.46 -2.2 256,706 - LRK54_RS01145 0.46 +0.6 256,706 - LRK54_RS01145 0.46 -1.2 256,706 - LRK54_RS01145 0.46 -0.7 256,706 - LRK54_RS01145 0.46 -0.5 256,706 - LRK54_RS01145 0.46 +1.2 256,706 - LRK54_RS01145 0.46 +0.0 256,706 - LRK54_RS01145 0.46 +0.4 256,706 - LRK54_RS01145 0.46 -0.2 256,706 - LRK54_RS01145 0.46 -0.5 256,706 - LRK54_RS01145 0.46 +0.8 256,812 + LRK54_RS01145 0.56 +1.8 256,812 + LRK54_RS01145 0.56 -1.2 256,812 + LRK54_RS01145 0.56 -0.6 256,812 + LRK54_RS01145 0.56 -0.5 256,812 + LRK54_RS01145 0.56 +1.8 256,813 - LRK54_RS01145 0.56 -0.0 256,813 - LRK54_RS01145 0.56 -0.7 256,813 - LRK54_RS01145 0.56 +0.0 256,813 - LRK54_RS01145 0.56 -0.5
Or see this region's nucleotide sequence