Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28415

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28410 and AO356_28415 are separated by 585 nucleotidesAO356_28415 and AO356_28420 are separated by 201 nucleotidesAO356_28420 and AO356_28425 are separated by 33 nucleotides AO356_28410: AO356_28410 - monooxygenase, at 6,606,774 to 6,608,018 _28410 AO356_28415: AO356_28415 - hypothetical protein, at 6,608,604 to 6,608,969 _28415 AO356_28420: AO356_28420 - hypothetical protein, at 6,609,171 to 6,609,896 _28420 AO356_28425: AO356_28425 - hypothetical protein, at 6,609,930 to 6,610,556 _28425 Position (kb) 6608 6609Strain fitness (log2 ratio) -1 0 1at 6607.659 kb on + strand, within AO356_28410at 6607.659 kb on + strand, within AO356_28410at 6607.660 kb on - strand, within AO356_28410at 6607.929 kb on + strandat 6607.929 kb on + strandat 6607.944 kb on - strandat 6608.185 kb on - strandat 6608.606 kb on - strandat 6608.833 kb on + strand, within AO356_28415at 6608.833 kb on + strand, within AO356_28415at 6608.833 kb on + strand, within AO356_28415at 6608.866 kb on + strand, within AO356_28415at 6608.867 kb on - strand, within AO356_28415at 6608.867 kb on - strand, within AO356_28415at 6608.867 kb on - strand, within AO356_28415at 6608.986 kb on - strandat 6608.995 kb on - strandat 6609.061 kb on + strandat 6609.085 kb on + strandat 6609.181 kb on + strandat 6609.181 kb on + strandat 6609.182 kb on - strandat 6609.327 kb on + strand, within AO356_28420at 6609.327 kb on + strand, within AO356_28420at 6609.477 kb on + strand, within AO356_28420at 6609.478 kb on - strand, within AO356_28420at 6609.633 kb on + strand, within AO356_28420at 6609.633 kb on + strand, within AO356_28420at 6609.633 kb on + strand, within AO356_28420at 6609.633 kb on + strand, within AO356_28420at 6609.633 kb on + strand, within AO356_28420at 6609.633 kb on + strand, within AO356_28420at 6609.634 kb on - strand, within AO356_28420at 6609.634 kb on - strand, within AO356_28420at 6609.634 kb on - strand, within AO356_28420at 6609.634 kb on - strand, within AO356_28420at 6609.654 kb on + strand, within AO356_28420at 6609.655 kb on - strand, within AO356_28420

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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6,607,659 + AO356_28410 0.71 +0.4
6,607,659 + AO356_28410 0.71 -0.4
6,607,660 - AO356_28410 0.71 +0.7
6,607,929 + +0.0
6,607,929 + -0.5
6,607,944 - -0.1
6,608,185 - -0.5
6,608,606 - +0.0
6,608,833 + AO356_28415 0.63 +0.1
6,608,833 + AO356_28415 0.63 +0.3
6,608,833 + AO356_28415 0.63 +0.1
6,608,866 + AO356_28415 0.72 -0.4
6,608,867 - AO356_28415 0.72 +0.2
6,608,867 - AO356_28415 0.72 -0.6
6,608,867 - AO356_28415 0.72 +0.1
6,608,986 - -0.9
6,608,995 - +0.8
6,609,061 + -0.4
6,609,085 + -0.1
6,609,181 + +0.0
6,609,181 + +0.3
6,609,182 - -0.6
6,609,327 + AO356_28420 0.21 -0.4
6,609,327 + AO356_28420 0.21 -0.6
6,609,477 + AO356_28420 0.42 +1.0
6,609,478 - AO356_28420 0.42 +0.0
6,609,633 + AO356_28420 0.64 +1.2
6,609,633 + AO356_28420 0.64 +1.3
6,609,633 + AO356_28420 0.64 -0.3
6,609,633 + AO356_28420 0.64 +1.0
6,609,633 + AO356_28420 0.64 +1.3
6,609,633 + AO356_28420 0.64 +0.1
6,609,634 - AO356_28420 0.64 +0.2
6,609,634 - AO356_28420 0.64 +0.4
6,609,634 - AO356_28420 0.64 -1.0
6,609,634 - AO356_28420 0.64 -0.3
6,609,654 + AO356_28420 0.67 -1.1
6,609,655 - AO356_28420 0.67 +0.2

Or see this region's nucleotide sequence