Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28375 and AO356_28380 are separated by 72 nucleotides AO356_28380 and AO356_28385 are separated by 11 nucleotides AO356_28385 and AO356_28390 are separated by 67 nucleotides
AO356_28375: AO356_28375 - ABC transporter permease, at 6,599,299 to 6,600,624
_28375
AO356_28380: AO356_28380 - ABC transporter permease, at 6,600,697 to 6,601,764
_28380
AO356_28385: AO356_28385 - ABC transporter permease, at 6,601,776 to 6,602,657
_28385
AO356_28390: AO356_28390 - ABC transporter ATP-binding protein, at 6,602,725 to 6,603,507
_28390
Position (kb)
6600
6601
6602 Strain fitness (log2 ratio)
-2
-1
0
1 at 6600.024 kb on - strand, within AO356_28375 at 6600.068 kb on + strand, within AO356_28375 at 6600.171 kb on - strand, within AO356_28375 at 6600.228 kb on + strand, within AO356_28375 at 6600.389 kb on + strand, within AO356_28375 at 6600.390 kb on - strand, within AO356_28375 at 6600.390 kb on - strand, within AO356_28375 at 6600.452 kb on + strand, within AO356_28375 at 6600.453 kb on - strand, within AO356_28375 at 6600.461 kb on + strand, within AO356_28375 at 6600.462 kb on - strand, within AO356_28375 at 6600.537 kb on - strand at 6600.639 kb on + strand at 6600.653 kb on + strand at 6600.803 kb on - strand at 6601.014 kb on - strand, within AO356_28380 at 6601.221 kb on - strand, within AO356_28380 at 6601.256 kb on - strand, within AO356_28380 at 6601.370 kb on + strand, within AO356_28380 at 6601.478 kb on - strand, within AO356_28380 at 6601.490 kb on + strand, within AO356_28380 at 6601.490 kb on + strand, within AO356_28380 at 6601.491 kb on - strand, within AO356_28380 at 6601.821 kb on + strand at 6601.895 kb on - strand, within AO356_28385 at 6602.573 kb on - strand at 6602.606 kb on - strand at 6602.606 kb on - strand at 6602.606 kb on - strand at 6602.606 kb on - strand at 6602.606 kb on - strand at 6602.606 kb on - strand at 6602.668 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 6,600,024 - AO356_28375 0.55 +0.6 6,600,068 + AO356_28375 0.58 +0.7 6,600,171 - AO356_28375 0.66 +0.4 6,600,228 + AO356_28375 0.70 -0.4 6,600,389 + AO356_28375 0.82 +0.7 6,600,390 - AO356_28375 0.82 +0.5 6,600,390 - AO356_28375 0.82 +1.5 6,600,452 + AO356_28375 0.87 +0.6 6,600,453 - AO356_28375 0.87 -0.5 6,600,461 + AO356_28375 0.88 +0.6 6,600,462 - AO356_28375 0.88 -2.0 6,600,537 - -0.3 6,600,639 + +1.1 6,600,653 + -0.1 6,600,803 - +0.5 6,601,014 - AO356_28380 0.30 +0.8 6,601,221 - AO356_28380 0.49 -0.3 6,601,256 - AO356_28380 0.52 -0.3 6,601,370 + AO356_28380 0.63 -0.2 6,601,478 - AO356_28380 0.73 -0.3 6,601,490 + AO356_28380 0.74 -0.7 6,601,490 + AO356_28380 0.74 -0.6 6,601,491 - AO356_28380 0.74 -0.8 6,601,821 + -1.0 6,601,895 - AO356_28385 0.13 +0.7 6,602,573 - -0.9 6,602,606 - -0.8 6,602,606 - -0.3 6,602,606 - -2.0 6,602,606 - +0.5 6,602,606 - -0.2 6,602,606 - +1.0 6,602,668 - -0.3
Or see this region's nucleotide sequence