Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26340 and AO356_26345 are separated by 16 nucleotides AO356_26345 and AO356_26350 are separated by 16 nucleotides AO356_26350 and AO356_26355 are separated by 9 nucleotides
AO356_26340: AO356_26340 - AMP-binding protein, at 5,965,827 to 5,967,491
_26340
AO356_26345: AO356_26345 - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 5,967,508 to 5,968,269
_26345
AO356_26350: AO356_26350 - acetyl-CoA acetyltransferase, at 5,968,286 to 5,969,473
_26350
AO356_26355: AO356_26355 - 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) , at 5,969,483 to 5,970,610
_26355
Position (kb)
5968
5969
5970 Strain fitness (log2 ratio)
-1
0
1 at 5967.364 kb on - strand at 5967.428 kb on + strand at 5967.807 kb on + strand, within AO356_26345 at 5967.807 kb on + strand, within AO356_26345 at 5967.808 kb on - strand, within AO356_26345 at 5967.808 kb on - strand, within AO356_26345 at 5967.858 kb on + strand, within AO356_26345 at 5967.936 kb on + strand, within AO356_26345 at 5967.936 kb on + strand, within AO356_26345 at 5967.937 kb on - strand, within AO356_26345 at 5967.937 kb on - strand, within AO356_26345 at 5968.197 kb on + strand at 5968.198 kb on - strand at 5968.267 kb on + strand at 5968.267 kb on + strand at 5968.267 kb on + strand at 5968.268 kb on - strand at 5968.271 kb on + strand at 5968.271 kb on + strand at 5968.271 kb on + strand at 5968.271 kb on + strand at 5968.272 kb on - strand at 5968.300 kb on + strand at 5968.301 kb on - strand at 5968.301 kb on - strand at 5968.301 kb on - strand at 5968.301 kb on - strand at 5968.658 kb on + strand, within AO356_26350 at 5968.746 kb on - strand, within AO356_26350 at 5968.746 kb on - strand, within AO356_26350 at 5969.468 kb on + strand at 5969.469 kb on - strand at 5969.469 kb on - strand at 5969.469 kb on - strand at 5969.469 kb on - strand at 5969.469 kb on - strand at 5969.472 kb on - strand at 5969.672 kb on + strand, within AO356_26355 at 5969.681 kb on + strand, within AO356_26355 at 5969.682 kb on - strand, within AO356_26355 at 5969.919 kb on - strand, within AO356_26355 at 5969.919 kb on - strand, within AO356_26355 at 5969.919 kb on - strand, within AO356_26355 at 5969.919 kb on - strand, within AO356_26355 at 5969.919 kb on - strand, within AO356_26355 at 5969.919 kb on - strand, within AO356_26355 at 5970.054 kb on - strand, within AO356_26355 at 5970.170 kb on + strand, within AO356_26355 at 5970.377 kb on + strand at 5970.377 kb on + strand, within AO356_26355
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,967,364 - +0.1 5,967,428 + -0.2 5,967,807 + AO356_26345 0.39 +0.6 5,967,807 + AO356_26345 0.39 -1.7 5,967,808 - AO356_26345 0.39 -0.4 5,967,808 - AO356_26345 0.39 -0.4 5,967,858 + AO356_26345 0.46 -0.8 5,967,936 + AO356_26345 0.56 -0.1 5,967,936 + AO356_26345 0.56 +0.4 5,967,937 - AO356_26345 0.56 -0.8 5,967,937 - AO356_26345 0.56 +0.6 5,968,197 + -0.2 5,968,198 - +0.4 5,968,267 + -1.1 5,968,267 + -0.1 5,968,267 + -0.6 5,968,268 - +0.4 5,968,271 + -0.5 5,968,271 + -0.2 5,968,271 + +1.3 5,968,271 + +0.6 5,968,272 - -0.2 5,968,300 + -0.2 5,968,301 - -0.1 5,968,301 - -1.3 5,968,301 - -0.4 5,968,301 - -0.4 5,968,658 + AO356_26350 0.31 -0.1 5,968,746 - AO356_26350 0.39 +1.1 5,968,746 - AO356_26350 0.39 +1.4 5,969,468 + +0.3 5,969,469 - -0.2 5,969,469 - +0.7 5,969,469 - +0.0 5,969,469 - -0.1 5,969,469 - +0.1 5,969,472 - -0.7 5,969,672 + AO356_26355 0.17 +0.1 5,969,681 + AO356_26355 0.18 +0.0 5,969,682 - AO356_26355 0.18 +0.4 5,969,919 - AO356_26355 0.39 +0.6 5,969,919 - AO356_26355 0.39 +0.5 5,969,919 - AO356_26355 0.39 +0.6 5,969,919 - AO356_26355 0.39 -0.2 5,969,919 - AO356_26355 0.39 +0.5 5,969,919 - AO356_26355 0.39 +0.2 5,970,054 - AO356_26355 0.51 +0.9 5,970,170 + AO356_26355 0.61 -1.6 5,970,377 + +1.6 5,970,377 + AO356_26355 0.79 +0.1
Or see this region's nucleotide sequence