Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22255 and AO356_22260 are separated by 40 nucleotides AO356_22260 and AO356_22265 are separated by 60 nucleotides
AO356_22255: AO356_22255 - gamma-glutamyltranspeptidase, at 4,976,702 to 4,978,429
_22255
AO356_22260: AO356_22260 - isochorismatase, at 4,978,470 to 4,979,003
_22260
AO356_22265: AO356_22265 - hypothetical protein, at 4,979,064 to 4,979,924
_22265
Position (kb) 4978
4979
4980 Strain fitness (log2 ratio) -1
0
1 at 4977.513 kb on - strand, within AO356_22255 at 4977.520 kb on + strand, within AO356_22255 at 4977.520 kb on + strand, within AO356_22255 at 4977.520 kb on + strand, within AO356_22255 at 4977.521 kb on - strand, within AO356_22255 at 4977.521 kb on - strand, within AO356_22255 at 4977.574 kb on + strand, within AO356_22255 at 4977.660 kb on - strand, within AO356_22255 at 4977.677 kb on + strand, within AO356_22255 at 4977.677 kb on + strand, within AO356_22255 at 4977.678 kb on - strand, within AO356_22255 at 4977.735 kb on - strand, within AO356_22255 at 4977.735 kb on - strand, within AO356_22255 at 4977.735 kb on - strand, within AO356_22255 at 4977.735 kb on - strand, within AO356_22255 at 4977.747 kb on + strand, within AO356_22255 at 4977.748 kb on - strand, within AO356_22255 at 4977.836 kb on + strand, within AO356_22255 at 4977.878 kb on + strand, within AO356_22255 at 4977.878 kb on + strand, within AO356_22255 at 4977.878 kb on + strand, within AO356_22255 at 4977.878 kb on + strand, within AO356_22255 at 4977.878 kb on + strand, within AO356_22255 at 4977.878 kb on + strand, within AO356_22255 at 4977.878 kb on + strand, within AO356_22255 at 4977.879 kb on - strand, within AO356_22255 at 4977.879 kb on - strand, within AO356_22255 at 4977.879 kb on - strand, within AO356_22255 at 4977.879 kb on - strand, within AO356_22255 at 4977.986 kb on + strand, within AO356_22255 at 4977.986 kb on + strand, within AO356_22255 at 4977.986 kb on + strand, within AO356_22255 at 4977.986 kb on + strand, within AO356_22255 at 4977.986 kb on + strand, within AO356_22255 at 4977.987 kb on - strand, within AO356_22255 at 4977.987 kb on - strand, within AO356_22255 at 4977.987 kb on - strand, within AO356_22255 at 4977.987 kb on - strand, within AO356_22255 at 4977.987 kb on - strand, within AO356_22255 at 4977.987 kb on - strand, within AO356_22255 at 4978.157 kb on + strand, within AO356_22255 at 4978.379 kb on + strand at 4978.379 kb on + strand at 4978.490 kb on + strand at 4978.731 kb on + strand, within AO356_22260 at 4978.731 kb on + strand, within AO356_22260 at 4978.806 kb on + strand, within AO356_22260 at 4978.806 kb on + strand, within AO356_22260 at 4978.975 kb on + strand at 4978.976 kb on - strand at 4979.038 kb on + strand at 4979.038 kb on + strand at 4979.038 kb on + strand at 4979.039 kb on - strand at 4979.039 kb on - strand at 4979.039 kb on - strand at 4979.039 kb on - strand at 4979.092 kb on + strand at 4979.092 kb on + strand at 4979.320 kb on + strand, within AO356_22265 at 4979.320 kb on + strand, within AO356_22265 at 4979.320 kb on + strand, within AO356_22265 at 4979.321 kb on - strand, within AO356_22265 at 4979.321 kb on - strand, within AO356_22265 at 4979.321 kb on - strand, within AO356_22265 at 4979.321 kb on - strand, within AO356_22265 at 4979.566 kb on + strand, within AO356_22265
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,977,513 - AO356_22255 0.47 -0.0 4,977,520 + AO356_22255 0.47 +0.3 4,977,520 + AO356_22255 0.47 +0.5 4,977,520 + AO356_22255 0.47 +0.3 4,977,521 - AO356_22255 0.47 +0.8 4,977,521 - AO356_22255 0.47 +0.1 4,977,574 + AO356_22255 0.50 +0.2 4,977,660 - AO356_22255 0.55 +0.7 4,977,677 + AO356_22255 0.56 -0.3 4,977,677 + AO356_22255 0.56 +1.4 4,977,678 - AO356_22255 0.56 -0.2 4,977,735 - AO356_22255 0.60 +0.3 4,977,735 - AO356_22255 0.60 +0.2 4,977,735 - AO356_22255 0.60 -0.6 4,977,735 - AO356_22255 0.60 -0.0 4,977,747 + AO356_22255 0.60 -0.9 4,977,748 - AO356_22255 0.61 +0.5 4,977,836 + AO356_22255 0.66 +0.8 4,977,878 + AO356_22255 0.68 +0.1 4,977,878 + AO356_22255 0.68 +0.0 4,977,878 + AO356_22255 0.68 +0.5 4,977,878 + AO356_22255 0.68 +0.9 4,977,878 + AO356_22255 0.68 +0.5 4,977,878 + AO356_22255 0.68 +0.8 4,977,878 + AO356_22255 0.68 +0.9 4,977,879 - AO356_22255 0.68 -0.0 4,977,879 - AO356_22255 0.68 -0.1 4,977,879 - AO356_22255 0.68 -0.3 4,977,879 - AO356_22255 0.68 -0.5 4,977,986 + AO356_22255 0.74 -0.2 4,977,986 + AO356_22255 0.74 -0.2 4,977,986 + AO356_22255 0.74 -0.6 4,977,986 + AO356_22255 0.74 +0.7 4,977,986 + AO356_22255 0.74 -0.2 4,977,987 - AO356_22255 0.74 -0.3 4,977,987 - AO356_22255 0.74 -0.1 4,977,987 - AO356_22255 0.74 +0.3 4,977,987 - AO356_22255 0.74 -0.8 4,977,987 - AO356_22255 0.74 -0.5 4,977,987 - AO356_22255 0.74 -1.0 4,978,157 + AO356_22255 0.84 -0.4 4,978,379 + +0.7 4,978,379 + -0.4 4,978,490 + -0.9 4,978,731 + AO356_22260 0.49 -0.5 4,978,731 + AO356_22260 0.49 -0.0 4,978,806 + AO356_22260 0.63 -0.7 4,978,806 + AO356_22260 0.63 +0.1 4,978,975 + +0.1 4,978,976 - -0.6 4,979,038 + +0.9 4,979,038 + +0.4 4,979,038 + -0.4 4,979,039 - -0.4 4,979,039 - +0.4 4,979,039 - -1.6 4,979,039 - -0.7 4,979,092 + +0.5 4,979,092 + -0.4 4,979,320 + AO356_22265 0.30 -0.4 4,979,320 + AO356_22265 0.30 -0.8 4,979,320 + AO356_22265 0.30 +0.0 4,979,321 - AO356_22265 0.30 +0.4 4,979,321 - AO356_22265 0.30 -0.1 4,979,321 - AO356_22265 0.30 -0.1 4,979,321 - AO356_22265 0.30 -0.2 4,979,566 + AO356_22265 0.58 +0.3
Or see this region's nucleotide sequence