Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21590

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21580 and AO356_21585 overlap by 4 nucleotidesAO356_21585 and AO356_21590 are separated by 53 nucleotidesAO356_21590 and AO356_21595 are separated by 232 nucleotides AO356_21580: AO356_21580 - branched-chain amino acid ABC transporter permease, at 4,832,165 to 4,832,875 _21580 AO356_21585: AO356_21585 - branched-chain amino acid transporter, at 4,832,872 to 4,833,180 _21585 AO356_21590: AO356_21590 - hypothetical protein, at 4,833,234 to 4,833,440 _21590 AO356_21595: AO356_21595 - MFS transporter, at 4,833,673 to 4,834,884 _21595 Position (kb) 4833 4834Strain fitness (log2 ratio) -2 -1 0 1 2at 4832.260 kb on - strand, within AO356_21580at 4832.260 kb on - strand, within AO356_21580at 4832.308 kb on + strand, within AO356_21580at 4832.308 kb on + strand, within AO356_21580at 4832.308 kb on + strand, within AO356_21580at 4832.309 kb on - strand, within AO356_21580at 4832.460 kb on - strand, within AO356_21580at 4832.495 kb on + strand, within AO356_21580at 4832.580 kb on + strand, within AO356_21580at 4832.786 kb on + strand, within AO356_21580at 4832.787 kb on - strand, within AO356_21580at 4832.792 kb on + strand, within AO356_21580at 4832.792 kb on + strand, within AO356_21580at 4832.792 kb on + strand, within AO356_21580at 4832.792 kb on + strand, within AO356_21580at 4832.792 kb on + strand, within AO356_21580at 4832.793 kb on - strand, within AO356_21580at 4832.793 kb on - strand, within AO356_21580at 4832.912 kb on + strand, within AO356_21585at 4832.986 kb on + strand, within AO356_21585at 4833.038 kb on + strand, within AO356_21585at 4833.038 kb on + strand, within AO356_21585at 4833.039 kb on - strand, within AO356_21585at 4833.149 kb on + strand, within AO356_21585at 4833.149 kb on + strand, within AO356_21585at 4833.149 kb on + strand, within AO356_21585at 4833.150 kb on - strandat 4833.150 kb on - strandat 4833.390 kb on + strand, within AO356_21590at 4833.391 kb on - strand, within AO356_21590at 4833.391 kb on - strand, within AO356_21590at 4833.443 kb on + strandat 4833.443 kb on + strandat 4833.443 kb on + strandat 4833.443 kb on + strandat 4833.444 kb on - strandat 4833.495 kb on + strandat 4833.636 kb on + strandat 4833.636 kb on + strandat 4833.636 kb on + strandat 4833.636 kb on + strandat 4833.636 kb on + strandat 4833.637 kb on - strandat 4833.637 kb on - strandat 4833.637 kb on - strandat 4833.637 kb on - strandat 4833.637 kb on - strandat 4833.637 kb on - strandat 4833.637 kb on - strandat 4833.647 kb on + strandat 4833.648 kb on - strandat 4833.648 kb on - strandat 4833.650 kb on + strandat 4833.651 kb on - strandat 4833.923 kb on + strand, within AO356_21595at 4833.924 kb on - strand, within AO356_21595at 4833.924 kb on - strand, within AO356_21595at 4833.924 kb on - strand, within AO356_21595at 4833.974 kb on + strand, within AO356_21595at 4833.975 kb on - strand, within AO356_21595at 4833.975 kb on - strand, within AO356_21595at 4834.021 kb on - strand, within AO356_21595at 4834.031 kb on + strand, within AO356_21595at 4834.031 kb on + strand, within AO356_21595at 4834.031 kb on + strand, within AO356_21595at 4834.032 kb on - strand, within AO356_21595at 4834.032 kb on - strand, within AO356_21595at 4834.032 kb on - strand, within AO356_21595at 4834.130 kb on + strand, within AO356_21595at 4834.130 kb on + strand, within AO356_21595at 4834.130 kb on + strand, within AO356_21595at 4834.131 kb on - strand, within AO356_21595at 4834.151 kb on + strand, within AO356_21595at 4834.151 kb on + strand, within AO356_21595at 4834.151 kb on + strand, within AO356_21595

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,832,260 - AO356_21580 0.13 +0.2
4,832,260 - AO356_21580 0.13 +0.5
4,832,308 + AO356_21580 0.20 -0.5
4,832,308 + AO356_21580 0.20 -1.6
4,832,308 + AO356_21580 0.20 -0.7
4,832,309 - AO356_21580 0.20 +0.5
4,832,460 - AO356_21580 0.41 -2.1
4,832,495 + AO356_21580 0.46 -0.8
4,832,580 + AO356_21580 0.58 -0.4
4,832,786 + AO356_21580 0.87 -0.5
4,832,787 - AO356_21580 0.87 +0.0
4,832,792 + AO356_21580 0.88 -0.2
4,832,792 + AO356_21580 0.88 +0.3
4,832,792 + AO356_21580 0.88 -1.4
4,832,792 + AO356_21580 0.88 +0.5
4,832,792 + AO356_21580 0.88 -0.2
4,832,793 - AO356_21580 0.88 +0.3
4,832,793 - AO356_21580 0.88 -0.2
4,832,912 + AO356_21585 0.13 +0.1
4,832,986 + AO356_21585 0.37 +0.7
4,833,038 + AO356_21585 0.54 +0.8
4,833,038 + AO356_21585 0.54 -0.0
4,833,039 - AO356_21585 0.54 -0.4
4,833,149 + AO356_21585 0.90 -1.8
4,833,149 + AO356_21585 0.90 +0.6
4,833,149 + AO356_21585 0.90 +0.3
4,833,150 - -0.5
4,833,150 - +0.4
4,833,390 + AO356_21590 0.75 -1.6
4,833,391 - AO356_21590 0.76 -0.3
4,833,391 - AO356_21590 0.76 -0.9
4,833,443 + +1.1
4,833,443 + -0.1
4,833,443 + +0.7
4,833,443 + -0.4
4,833,444 - +0.6
4,833,495 + +0.6
4,833,636 + +0.3
4,833,636 + -0.5
4,833,636 + -0.4
4,833,636 + -0.0
4,833,636 + +0.7
4,833,637 - -0.1
4,833,637 - -0.2
4,833,637 - +0.6
4,833,637 - +0.3
4,833,637 - +0.2
4,833,637 - +2.1
4,833,637 - +0.4
4,833,647 + -1.4
4,833,648 - +0.9
4,833,648 - +0.1
4,833,650 + +0.6
4,833,651 - -0.7
4,833,923 + AO356_21595 0.21 +0.8
4,833,924 - AO356_21595 0.21 -0.6
4,833,924 - AO356_21595 0.21 +0.4
4,833,924 - AO356_21595 0.21 -0.4
4,833,974 + AO356_21595 0.25 -0.0
4,833,975 - AO356_21595 0.25 +1.0
4,833,975 - AO356_21595 0.25 +0.4
4,834,021 - AO356_21595 0.29 -1.1
4,834,031 + AO356_21595 0.30 +0.4
4,834,031 + AO356_21595 0.30 -0.4
4,834,031 + AO356_21595 0.30 -0.5
4,834,032 - AO356_21595 0.30 +0.7
4,834,032 - AO356_21595 0.30 +1.3
4,834,032 - AO356_21595 0.30 -0.5
4,834,130 + AO356_21595 0.38 +0.0
4,834,130 + AO356_21595 0.38 +0.5
4,834,130 + AO356_21595 0.38 -0.2
4,834,131 - AO356_21595 0.38 +0.6
4,834,151 + AO356_21595 0.39 +0.3
4,834,151 + AO356_21595 0.39 +0.2
4,834,151 + AO356_21595 0.39 -0.1

Or see this region's nucleotide sequence