Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21340 and AO356_21345 are separated by 146 nucleotides AO356_21345 and AO356_21350 are separated by 79 nucleotides AO356_21350 and AO356_21355 are separated by 53 nucleotides AO356_21355 and AO356_21360 are separated by 75 nucleotides AO356_21360 and AO356_21365 are separated by 181 nucleotides AO356_21365 and AO356_21370 are separated by 28 nucleotides
AO356_21340: AO356_21340 - glutamate--tRNA ligase, at 4,787,295 to 4,788,776
_21340
AO356_21345: AO356_21345 - tRNA-Ala, at 4,788,923 to 4,788,998
_21345
AO356_21350: AO356_21350 - tRNA-Glu, at 4,789,078 to 4,789,153
_21350
AO356_21355: AO356_21355 - tRNA-Ala, at 4,789,207 to 4,789,282
_21355
AO356_21360: AO356_21360 - tRNA-Glu, at 4,789,358 to 4,789,433
_21360
AO356_21365: AO356_21365 - TetR family transcriptional regulator, at 4,789,615 to 4,790,154
_21365
AO356_21370: AO356_21370 - hydrolase, at 4,790,183 to 4,791,016
_21370
Position (kb)
4789
4790 Strain fitness (log2 ratio)
-2
-1
0
1 at 4788.774 kb on + strand at 4788.856 kb on - strand at 4788.988 kb on + strand, within AO356_21345 at 4789.063 kb on + strand at 4789.063 kb on + strand at 4789.063 kb on + strand at 4789.063 kb on + strand at 4789.063 kb on + strand at 4789.063 kb on + strand at 4789.063 kb on + strand at 4789.063 kb on + strand at 4789.063 kb on + strand at 4789.063 kb on + strand at 4789.065 kb on + strand at 4789.065 kb on + strand at 4789.065 kb on + strand at 4789.065 kb on + strand at 4789.158 kb on + strand at 4789.272 kb on + strand, within AO356_21355 at 4789.285 kb on + strand at 4789.346 kb on + strand at 4789.346 kb on + strand at 4789.346 kb on + strand at 4789.457 kb on + strand at 4789.747 kb on + strand, within AO356_21365 at 4789.748 kb on - strand, within AO356_21365 at 4789.882 kb on + strand, within AO356_21365 at 4789.882 kb on + strand, within AO356_21365 at 4789.882 kb on + strand, within AO356_21365 at 4789.883 kb on - strand, within AO356_21365 at 4789.883 kb on - strand, within AO356_21365 at 4789.883 kb on - strand, within AO356_21365 at 4789.992 kb on + strand, within AO356_21365 at 4789.992 kb on + strand, within AO356_21365 at 4790.202 kb on + strand at 4790.206 kb on + strand at 4790.206 kb on + strand at 4790.206 kb on + strand at 4790.206 kb on + strand at 4790.206 kb on + strand at 4790.206 kb on + strand at 4790.206 kb on + strand at 4790.206 kb on + strand at 4790.206 kb on + strand at 4790.206 kb on + strand at 4790.207 kb on - strand at 4790.207 kb on - strand at 4790.207 kb on - strand at 4790.207 kb on - strand at 4790.207 kb on - strand at 4790.335 kb on + strand, within AO356_21370 at 4790.336 kb on - strand, within AO356_21370 at 4790.336 kb on - strand, within AO356_21370
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,788,774 + +0.4 4,788,856 - +0.5 4,788,988 + AO356_21345 0.86 -1.4 4,789,063 + +0.7 4,789,063 + +1.0 4,789,063 + +0.8 4,789,063 + -0.6 4,789,063 + -0.1 4,789,063 + -0.1 4,789,063 + +0.2 4,789,063 + -1.9 4,789,063 + -0.4 4,789,063 + -0.0 4,789,065 + +0.2 4,789,065 + -0.5 4,789,065 + +0.5 4,789,065 + -0.6 4,789,158 + -0.2 4,789,272 + AO356_21355 0.86 -0.3 4,789,285 + -1.4 4,789,346 + -0.5 4,789,346 + +0.2 4,789,346 + +0.5 4,789,457 + +0.0 4,789,747 + AO356_21365 0.24 -1.0 4,789,748 - AO356_21365 0.25 -0.0 4,789,882 + AO356_21365 0.49 +0.0 4,789,882 + AO356_21365 0.49 -0.4 4,789,882 + AO356_21365 0.49 -2.1 4,789,883 - AO356_21365 0.50 +0.3 4,789,883 - AO356_21365 0.50 +0.1 4,789,883 - AO356_21365 0.50 +0.7 4,789,992 + AO356_21365 0.70 -0.5 4,789,992 + AO356_21365 0.70 -0.1 4,790,202 + -1.3 4,790,206 + +0.5 4,790,206 + -0.1 4,790,206 + +0.7 4,790,206 + +0.1 4,790,206 + -0.0 4,790,206 + -0.3 4,790,206 + -0.6 4,790,206 + +0.2 4,790,206 + +0.0 4,790,206 + -0.7 4,790,207 - -0.7 4,790,207 - +1.2 4,790,207 - +0.5 4,790,207 - +0.4 4,790,207 - -0.1 4,790,335 + AO356_21370 0.18 -1.1 4,790,336 - AO356_21370 0.18 -0.6 4,790,336 - AO356_21370 0.18 -0.3
Or see this region's nucleotide sequence