Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_19865 and AO356_19870 are separated by 110 nucleotides AO356_19870 and AO356_19875 are separated by 196 nucleotides
AO356_19865: AO356_19865 - GntR family transcriptional regulator, at 4,453,108 to 4,454,496
_19865
AO356_19870: AO356_19870 - chemotaxis protein, at 4,454,607 to 4,456,574
_19870
AO356_19875: AO356_19875 - hypothetical protein, at 4,456,771 to 4,457,529
_19875
Position (kb)
4454
4455
4456
4457 Strain fitness (log2 ratio)
-1
0
1
2 at 4453.952 kb on - strand, within AO356_19865 at 4453.952 kb on - strand, within AO356_19865 at 4453.952 kb on - strand, within AO356_19865 at 4454.011 kb on + strand, within AO356_19865 at 4454.011 kb on + strand, within AO356_19865 at 4454.012 kb on - strand, within AO356_19865 at 4454.079 kb on + strand, within AO356_19865 at 4454.079 kb on + strand, within AO356_19865 at 4454.241 kb on - strand, within AO356_19865 at 4454.241 kb on - strand, within AO356_19865 at 4454.330 kb on + strand, within AO356_19865 at 4454.330 kb on + strand, within AO356_19865 at 4454.331 kb on - strand, within AO356_19865 at 4454.739 kb on + strand at 4454.814 kb on + strand, within AO356_19870 at 4454.814 kb on + strand, within AO356_19870 at 4454.873 kb on - strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.091 kb on - strand, within AO356_19870 at 4455.091 kb on - strand, within AO356_19870 at 4455.091 kb on - strand, within AO356_19870 at 4455.091 kb on - strand, within AO356_19870 at 4455.091 kb on - strand, within AO356_19870 at 4455.091 kb on - strand, within AO356_19870 at 4455.091 kb on - strand, within AO356_19870 at 4455.092 kb on + strand, within AO356_19870 at 4455.092 kb on + strand, within AO356_19870 at 4455.093 kb on - strand, within AO356_19870 at 4455.350 kb on + strand, within AO356_19870 at 4455.351 kb on - strand, within AO356_19870 at 4455.381 kb on + strand, within AO356_19870 at 4455.382 kb on - strand, within AO356_19870 at 4455.414 kb on + strand, within AO356_19870 at 4455.415 kb on - strand, within AO356_19870 at 4455.731 kb on + strand, within AO356_19870 at 4456.625 kb on + strand at 4456.633 kb on + strand at 4456.633 kb on + strand at 4456.633 kb on + strand at 4456.633 kb on + strand at 4456.634 kb on - strand at 4456.634 kb on - strand at 4456.634 kb on - strand at 4456.634 kb on - strand at 4456.638 kb on + strand at 4456.638 kb on + strand at 4456.638 kb on + strand at 4456.638 kb on + strand at 4456.638 kb on + strand at 4456.638 kb on + strand at 4456.639 kb on - strand at 4456.639 kb on - strand at 4456.639 kb on - strand at 4456.914 kb on - strand, within AO356_19875 at 4456.931 kb on + strand, within AO356_19875 at 4456.932 kb on - strand, within AO356_19875 at 4457.293 kb on - strand, within AO356_19875 at 4457.293 kb on - strand, within AO356_19875 at 4457.293 kb on - strand, within AO356_19875 at 4457.425 kb on + strand, within AO356_19875 at 4457.425 kb on + strand, within AO356_19875 at 4457.425 kb on + strand, within AO356_19875 at 4457.425 kb on + strand, within AO356_19875 at 4457.426 kb on - strand, within AO356_19875 at 4457.426 kb on - strand, within AO356_19875 at 4457.426 kb on - strand, within AO356_19875 at 4457.477 kb on + strand at 4457.477 kb on + strand at 4457.477 kb on + strand at 4457.478 kb on - strand at 4457.478 kb on - strand at 4457.478 kb on - strand at 4457.478 kb on - strand at 4457.556 kb on + strand at 4457.557 kb on - strand at 4457.557 kb on - strand at 4457.557 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,453,952 - AO356_19865 0.61 -1.6 4,453,952 - AO356_19865 0.61 -0.4 4,453,952 - AO356_19865 0.61 -0.6 4,454,011 + AO356_19865 0.65 -0.2 4,454,011 + AO356_19865 0.65 +0.6 4,454,012 - AO356_19865 0.65 -0.1 4,454,079 + AO356_19865 0.70 -0.1 4,454,079 + AO356_19865 0.70 +0.2 4,454,241 - AO356_19865 0.82 -1.3 4,454,241 - AO356_19865 0.82 +0.3 4,454,330 + AO356_19865 0.88 -1.0 4,454,330 + AO356_19865 0.88 -0.5 4,454,331 - AO356_19865 0.88 -0.7 4,454,739 + -0.8 4,454,814 + AO356_19870 0.11 -0.1 4,454,814 + AO356_19870 0.11 -0.4 4,454,873 - AO356_19870 0.14 +0.6 4,455,090 + AO356_19870 0.25 -0.3 4,455,090 + AO356_19870 0.25 -0.1 4,455,090 + AO356_19870 0.25 +0.9 4,455,090 + AO356_19870 0.25 -0.1 4,455,090 + AO356_19870 0.25 +0.5 4,455,090 + AO356_19870 0.25 -0.2 4,455,090 + AO356_19870 0.25 -0.1 4,455,090 + AO356_19870 0.25 +0.4 4,455,090 + AO356_19870 0.25 +0.1 4,455,090 + AO356_19870 0.25 +0.4 4,455,091 - AO356_19870 0.25 -0.2 4,455,091 - AO356_19870 0.25 +0.3 4,455,091 - AO356_19870 0.25 -0.5 4,455,091 - AO356_19870 0.25 +0.4 4,455,091 - AO356_19870 0.25 +1.0 4,455,091 - AO356_19870 0.25 -0.4 4,455,091 - AO356_19870 0.25 -0.5 4,455,092 + AO356_19870 0.25 +0.7 4,455,092 + AO356_19870 0.25 -0.4 4,455,093 - AO356_19870 0.25 +0.8 4,455,350 + AO356_19870 0.38 +0.7 4,455,351 - AO356_19870 0.38 +0.0 4,455,381 + AO356_19870 0.39 -0.2 4,455,382 - AO356_19870 0.39 +0.5 4,455,414 + AO356_19870 0.41 +0.1 4,455,415 - AO356_19870 0.41 -0.3 4,455,731 + AO356_19870 0.57 +0.9 4,456,625 + +0.2 4,456,633 + +1.3 4,456,633 + -0.2 4,456,633 + -0.3 4,456,633 + -0.3 4,456,634 - -1.2 4,456,634 - +1.8 4,456,634 - -0.7 4,456,634 - +1.2 4,456,638 + -0.2 4,456,638 + -0.5 4,456,638 + +0.4 4,456,638 + +0.0 4,456,638 + +1.2 4,456,638 + -0.3 4,456,639 - -1.1 4,456,639 - +0.1 4,456,639 - -0.0 4,456,914 - AO356_19875 0.19 -0.0 4,456,931 + AO356_19875 0.21 -0.1 4,456,932 - AO356_19875 0.21 +0.1 4,457,293 - AO356_19875 0.69 -0.4 4,457,293 - AO356_19875 0.69 +0.5 4,457,293 - AO356_19875 0.69 +1.7 4,457,425 + AO356_19875 0.86 +0.4 4,457,425 + AO356_19875 0.86 -0.3 4,457,425 + AO356_19875 0.86 +0.3 4,457,425 + AO356_19875 0.86 +1.0 4,457,426 - AO356_19875 0.86 -0.5 4,457,426 - AO356_19875 0.86 -0.9 4,457,426 - AO356_19875 0.86 -0.2 4,457,477 + +0.4 4,457,477 + +0.0 4,457,477 + -0.0 4,457,478 - -0.5 4,457,478 - -0.3 4,457,478 - +0.6 4,457,478 - -0.2 4,457,556 + +0.7 4,457,557 - +0.9 4,457,557 - -0.2 4,457,557 - -0.5
Or see this region's nucleotide sequence