Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10605

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10595 and AO356_10600 overlap by 4 nucleotidesAO356_10600 and AO356_10605 are separated by 10 nucleotidesAO356_10605 and AO356_10610 are separated by 32 nucleotidesAO356_10610 and AO356_10615 are separated by 356 nucleotides AO356_10595: AO356_10595 - mangotoxin biosynthesis-involved protein MgoB, at 2,410,804 to 2,411,580 _10595 AO356_10600: AO356_10600 - aminobenzoate oxygenase, at 2,411,577 to 2,412,509 _10600 AO356_10605: AO356_10605 - peptide transporter, at 2,412,520 to 2,416,086 _10605 AO356_10610: AO356_10610 - polyketide cyclase, at 2,416,119 to 2,416,583 _10610 AO356_10615: AO356_10615 - chemotaxis protein, at 2,416,940 to 2,418,820 _10615 Position (kb) 2412 2413 2414 2415 2416 2417Strain fitness (log2 ratio) -2 -1 0 1 2at 2411.593 kb on - strandat 2411.593 kb on - strandat 2411.637 kb on - strandat 2411.769 kb on + strand, within AO356_10600at 2411.769 kb on + strand, within AO356_10600at 2411.910 kb on + strand, within AO356_10600at 2412.208 kb on + strand, within AO356_10600at 2412.208 kb on + strand, within AO356_10600at 2412.208 kb on + strand, within AO356_10600at 2412.208 kb on + strand, within AO356_10600at 2412.209 kb on - strand, within AO356_10600at 2412.216 kb on + strand, within AO356_10600at 2412.216 kb on + strand, within AO356_10600at 2412.285 kb on + strand, within AO356_10600at 2412.286 kb on - strand, within AO356_10600at 2412.394 kb on - strand, within AO356_10600at 2412.476 kb on - strandat 2412.495 kb on + strandat 2412.841 kb on - strandat 2413.123 kb on + strand, within AO356_10605at 2413.124 kb on - strand, within AO356_10605at 2413.196 kb on + strand, within AO356_10605at 2413.196 kb on + strand, within AO356_10605at 2413.197 kb on - strand, within AO356_10605at 2413.197 kb on - strand, within AO356_10605at 2413.382 kb on + strand, within AO356_10605at 2413.382 kb on + strand, within AO356_10605at 2413.382 kb on + strand, within AO356_10605at 2413.382 kb on + strand, within AO356_10605at 2413.382 kb on + strand, within AO356_10605at 2413.382 kb on + strand, within AO356_10605at 2413.382 kb on + strand, within AO356_10605at 2413.382 kb on + strand, within AO356_10605at 2413.383 kb on - strand, within AO356_10605at 2413.383 kb on - strand, within AO356_10605at 2413.383 kb on - strand, within AO356_10605at 2413.383 kb on - strand, within AO356_10605at 2413.383 kb on - strand, within AO356_10605at 2413.383 kb on - strand, within AO356_10605at 2413.383 kb on - strand, within AO356_10605at 2413.383 kb on - strand, within AO356_10605at 2413.383 kb on - strand, within AO356_10605at 2413.383 kb on - strand, within AO356_10605at 2413.385 kb on - strand, within AO356_10605at 2413.424 kb on - strand, within AO356_10605at 2413.424 kb on - strand, within AO356_10605at 2413.636 kb on + strand, within AO356_10605at 2413.636 kb on + strand, within AO356_10605at 2413.636 kb on + strand, within AO356_10605at 2413.636 kb on + strand, within AO356_10605at 2413.637 kb on - strand, within AO356_10605at 2413.637 kb on - strand, within AO356_10605at 2413.637 kb on - strand, within AO356_10605at 2413.637 kb on - strand, within AO356_10605at 2413.637 kb on - strand, within AO356_10605at 2413.637 kb on - strand, within AO356_10605at 2413.637 kb on - strand, within AO356_10605at 2413.711 kb on + strand, within AO356_10605at 2413.721 kb on - strand, within AO356_10605at 2414.038 kb on + strand, within AO356_10605at 2414.038 kb on + strand, within AO356_10605at 2414.038 kb on + strand, within AO356_10605at 2414.038 kb on + strand, within AO356_10605at 2414.039 kb on - strand, within AO356_10605at 2414.039 kb on - strand, within AO356_10605at 2414.039 kb on - strand, within AO356_10605at 2414.191 kb on + strand, within AO356_10605at 2414.191 kb on + strand, within AO356_10605at 2414.191 kb on + strand, within AO356_10605at 2414.191 kb on + strand, within AO356_10605at 2414.191 kb on + strand, within AO356_10605at 2414.192 kb on - strand, within AO356_10605at 2414.192 kb on - strand, within AO356_10605at 2414.192 kb on - strand, within AO356_10605at 2414.192 kb on - strand, within AO356_10605at 2414.254 kb on + strand, within AO356_10605at 2414.254 kb on + strand, within AO356_10605at 2414.296 kb on + strand, within AO356_10605at 2414.297 kb on - strand, within AO356_10605at 2414.367 kb on - strand, within AO356_10605at 2414.429 kb on + strand, within AO356_10605at 2414.429 kb on + strand, within AO356_10605at 2414.429 kb on + strand, within AO356_10605at 2414.429 kb on + strand, within AO356_10605at 2414.429 kb on + strand, within AO356_10605at 2414.430 kb on - strand, within AO356_10605at 2414.560 kb on + strand, within AO356_10605at 2414.560 kb on + strand, within AO356_10605at 2414.560 kb on + strand, within AO356_10605at 2414.560 kb on + strand, within AO356_10605at 2414.560 kb on + strand, within AO356_10605at 2414.561 kb on - strand, within AO356_10605at 2414.561 kb on - strand, within AO356_10605at 2414.561 kb on - strand, within AO356_10605at 2414.561 kb on - strand, within AO356_10605at 2414.578 kb on + strand, within AO356_10605at 2414.578 kb on + strand, within AO356_10605at 2414.579 kb on - strand, within AO356_10605at 2414.602 kb on + strand, within AO356_10605at 2414.602 kb on + strand, within AO356_10605at 2414.602 kb on + strand, within AO356_10605at 2414.603 kb on - strand, within AO356_10605at 2415.199 kb on + strand, within AO356_10605at 2415.199 kb on + strand, within AO356_10605at 2415.199 kb on + strand, within AO356_10605at 2415.199 kb on + strand, within AO356_10605at 2415.200 kb on - strand, within AO356_10605at 2415.308 kb on + strand, within AO356_10605at 2415.308 kb on + strand, within AO356_10605at 2415.308 kb on + strand, within AO356_10605at 2415.308 kb on + strand, within AO356_10605at 2415.308 kb on + strand, within AO356_10605at 2415.308 kb on + strand, within AO356_10605at 2415.308 kb on + strand, within AO356_10605at 2415.308 kb on + strand, within AO356_10605at 2415.309 kb on - strand, within AO356_10605at 2415.484 kb on + strand, within AO356_10605at 2415.484 kb on + strand, within AO356_10605at 2415.484 kb on + strand, within AO356_10605at 2415.484 kb on + strand, within AO356_10605at 2415.484 kb on + strand, within AO356_10605at 2415.485 kb on - strand, within AO356_10605at 2415.752 kb on - strandat 2415.811 kb on + strandat 2415.812 kb on - strandat 2415.812 kb on - strandat 2415.812 kb on - strandat 2415.812 kb on - strandat 2415.812 kb on - strandat 2415.928 kb on + strandat 2415.929 kb on - strandat 2415.929 kb on - strandat 2415.929 kb on - strandat 2415.929 kb on - strandat 2416.043 kb on + strandat 2416.044 kb on - strandat 2416.044 kb on - strandat 2416.044 kb on - strandat 2416.061 kb on - strandat 2416.061 kb on - strandat 2416.395 kb on + strand, within AO356_10610at 2416.395 kb on + strand, within AO356_10610at 2416.396 kb on - strand, within AO356_10610at 2416.396 kb on - strand, within AO356_10610at 2416.396 kb on - strand, within AO356_10610at 2416.581 kb on + strandat 2416.581 kb on + strandat 2416.581 kb on + strandat 2416.581 kb on + strandat 2416.581 kb on + strandat 2416.581 kb on + strandat 2416.582 kb on - strandat 2416.582 kb on - strandat 2416.582 kb on - strandat 2416.582 kb on - strandat 2416.582 kb on - strandat 2416.582 kb on - strandat 2416.582 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,411,593 - +2.4
2,411,593 - -0.1
2,411,637 - -1.1
2,411,769 + AO356_10600 0.21 -0.8
2,411,769 + AO356_10600 0.21 -0.7
2,411,910 + AO356_10600 0.36 +0.4
2,412,208 + AO356_10600 0.68 +1.0
2,412,208 + AO356_10600 0.68 +0.5
2,412,208 + AO356_10600 0.68 -0.6
2,412,208 + AO356_10600 0.68 -1.6
2,412,209 - AO356_10600 0.68 +0.0
2,412,216 + AO356_10600 0.68 -0.1
2,412,216 + AO356_10600 0.68 +1.1
2,412,285 + AO356_10600 0.76 -1.1
2,412,286 - AO356_10600 0.76 +0.5
2,412,394 - AO356_10600 0.88 +0.2
2,412,476 - -0.2
2,412,495 + -0.8
2,412,841 - +0.2
2,413,123 + AO356_10605 0.17 +0.2
2,413,124 - AO356_10605 0.17 -0.1
2,413,196 + AO356_10605 0.19 +0.4
2,413,196 + AO356_10605 0.19 -0.0
2,413,197 - AO356_10605 0.19 -0.5
2,413,197 - AO356_10605 0.19 -0.1
2,413,382 + AO356_10605 0.24 +0.3
2,413,382 + AO356_10605 0.24 -0.4
2,413,382 + AO356_10605 0.24 -0.3
2,413,382 + AO356_10605 0.24 +1.1
2,413,382 + AO356_10605 0.24 +0.5
2,413,382 + AO356_10605 0.24 +0.6
2,413,382 + AO356_10605 0.24 -0.2
2,413,382 + AO356_10605 0.24 -0.5
2,413,383 - AO356_10605 0.24 +0.4
2,413,383 - AO356_10605 0.24 +0.9
2,413,383 - AO356_10605 0.24 +0.0
2,413,383 - AO356_10605 0.24 +1.1
2,413,383 - AO356_10605 0.24 +0.1
2,413,383 - AO356_10605 0.24 -0.4
2,413,383 - AO356_10605 0.24 +0.1
2,413,383 - AO356_10605 0.24 +1.7
2,413,383 - AO356_10605 0.24 -0.3
2,413,383 - AO356_10605 0.24 -0.2
2,413,385 - AO356_10605 0.24 -0.1
2,413,424 - AO356_10605 0.25 +0.7
2,413,424 - AO356_10605 0.25 +0.6
2,413,636 + AO356_10605 0.31 -1.5
2,413,636 + AO356_10605 0.31 -1.4
2,413,636 + AO356_10605 0.31 +0.8
2,413,636 + AO356_10605 0.31 +0.2
2,413,637 - AO356_10605 0.31 +0.2
2,413,637 - AO356_10605 0.31 -0.6
2,413,637 - AO356_10605 0.31 -0.6
2,413,637 - AO356_10605 0.31 +0.3
2,413,637 - AO356_10605 0.31 +0.1
2,413,637 - AO356_10605 0.31 -0.4
2,413,637 - AO356_10605 0.31 +0.6
2,413,711 + AO356_10605 0.33 -0.0
2,413,721 - AO356_10605 0.34 +0.8
2,414,038 + AO356_10605 0.43 -0.2
2,414,038 + AO356_10605 0.43 +0.5
2,414,038 + AO356_10605 0.43 -0.3
2,414,038 + AO356_10605 0.43 +0.0
2,414,039 - AO356_10605 0.43 +1.0
2,414,039 - AO356_10605 0.43 -0.1
2,414,039 - AO356_10605 0.43 +0.6
2,414,191 + AO356_10605 0.47 +1.0
2,414,191 + AO356_10605 0.47 -0.2
2,414,191 + AO356_10605 0.47 -0.1
2,414,191 + AO356_10605 0.47 -0.3
2,414,191 + AO356_10605 0.47 +0.2
2,414,192 - AO356_10605 0.47 -0.0
2,414,192 - AO356_10605 0.47 -0.6
2,414,192 - AO356_10605 0.47 +0.2
2,414,192 - AO356_10605 0.47 +0.1
2,414,254 + AO356_10605 0.49 +1.0
2,414,254 + AO356_10605 0.49 -0.8
2,414,296 + AO356_10605 0.50 -0.6
2,414,297 - AO356_10605 0.50 +0.0
2,414,367 - AO356_10605 0.52 -1.8
2,414,429 + AO356_10605 0.54 -0.7
2,414,429 + AO356_10605 0.54 -0.6
2,414,429 + AO356_10605 0.54 +0.4
2,414,429 + AO356_10605 0.54 -0.4
2,414,429 + AO356_10605 0.54 +0.0
2,414,430 - AO356_10605 0.54 +0.3
2,414,560 + AO356_10605 0.57 +0.7
2,414,560 + AO356_10605 0.57 +0.5
2,414,560 + AO356_10605 0.57 +0.1
2,414,560 + AO356_10605 0.57 -0.4
2,414,560 + AO356_10605 0.57 +0.0
2,414,561 - AO356_10605 0.57 +0.6
2,414,561 - AO356_10605 0.57 +0.6
2,414,561 - AO356_10605 0.57 +0.2
2,414,561 - AO356_10605 0.57 +0.7
2,414,578 + AO356_10605 0.58 -0.5
2,414,578 + AO356_10605 0.58 +0.4
2,414,579 - AO356_10605 0.58 +0.3
2,414,602 + AO356_10605 0.58 +0.3
2,414,602 + AO356_10605 0.58 +0.1
2,414,602 + AO356_10605 0.58 -0.1
2,414,603 - AO356_10605 0.58 -0.7
2,415,199 + AO356_10605 0.75 +0.3
2,415,199 + AO356_10605 0.75 +0.4
2,415,199 + AO356_10605 0.75 -0.4
2,415,199 + AO356_10605 0.75 -0.1
2,415,200 - AO356_10605 0.75 +0.4
2,415,308 + AO356_10605 0.78 +0.3
2,415,308 + AO356_10605 0.78 +0.5
2,415,308 + AO356_10605 0.78 -0.0
2,415,308 + AO356_10605 0.78 -0.0
2,415,308 + AO356_10605 0.78 +0.5
2,415,308 + AO356_10605 0.78 +0.4
2,415,308 + AO356_10605 0.78 +0.3
2,415,308 + AO356_10605 0.78 +0.8
2,415,309 - AO356_10605 0.78 -0.0
2,415,484 + AO356_10605 0.83 -0.0
2,415,484 + AO356_10605 0.83 +0.3
2,415,484 + AO356_10605 0.83 +0.1
2,415,484 + AO356_10605 0.83 -0.7
2,415,484 + AO356_10605 0.83 +0.4
2,415,485 - AO356_10605 0.83 +0.4
2,415,752 - -0.1
2,415,811 + -0.4
2,415,812 - -0.5
2,415,812 - -0.1
2,415,812 - +0.9
2,415,812 - -0.5
2,415,812 - +0.2
2,415,928 + +0.1
2,415,929 - -0.2
2,415,929 - +0.1
2,415,929 - -0.3
2,415,929 - +0.6
2,416,043 + +0.3
2,416,044 - +1.6
2,416,044 - -0.0
2,416,044 - -0.3
2,416,061 - +0.3
2,416,061 - +0.8
2,416,395 + AO356_10610 0.59 +0.1
2,416,395 + AO356_10610 0.59 +0.8
2,416,396 - AO356_10610 0.60 +0.7
2,416,396 - AO356_10610 0.60 -0.4
2,416,396 - AO356_10610 0.60 +0.3
2,416,581 + +0.6
2,416,581 + +1.0
2,416,581 + +0.7
2,416,581 + +0.2
2,416,581 + +0.2
2,416,581 + -0.2
2,416,582 - -0.7
2,416,582 - +0.8
2,416,582 - -0.1
2,416,582 - +0.6
2,416,582 - +0.8
2,416,582 - -0.3
2,416,582 - +0.4

Or see this region's nucleotide sequence