Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00165 and AO356_00170 overlap by 19 nucleotides AO356_00170 and AO356_00175 overlap by 4 nucleotides AO356_00175 and AO356_00180 are separated by 9 nucleotides
AO356_00165: AO356_00165 - hypothetical protein, at 30,174 to 30,893
_00165
AO356_00170: AO356_00170 - lytic transglycosylase, at 30,875 to 31,423
_00170
AO356_00175: AO356_00175 - conjugal transfer protein, at 31,420 to 31,935
_00175
AO356_00180: AO356_00180 - conjugal transfer protein TraG, at 31,945 to 34,050
_00180
Position (kb) 31
32 Strain fitness (log2 ratio) -1
0
1
2 at 30.472 kb on + strand, within AO356_00165 at 30.473 kb on - strand, within AO356_00165 at 30.522 kb on + strand, within AO356_00165 at 30.522 kb on + strand, within AO356_00165 at 30.523 kb on - strand, within AO356_00165 at 30.629 kb on - strand, within AO356_00165 at 30.629 kb on - strand, within AO356_00165 at 30.696 kb on - strand, within AO356_00165 at 30.699 kb on + strand, within AO356_00165 at 30.699 kb on + strand, within AO356_00165 at 30.699 kb on + strand, within AO356_00165 at 30.699 kb on + strand, within AO356_00165 at 30.699 kb on + strand, within AO356_00165 at 30.700 kb on - strand, within AO356_00165 at 30.700 kb on - strand, within AO356_00165 at 30.700 kb on - strand, within AO356_00165 at 30.700 kb on - strand, within AO356_00165 at 30.703 kb on + strand, within AO356_00165 at 30.703 kb on + strand, within AO356_00165 at 30.703 kb on + strand, within AO356_00165 at 30.704 kb on - strand, within AO356_00165 at 30.792 kb on - strand, within AO356_00165 at 30.898 kb on + strand at 31.126 kb on - strand, within AO356_00170 at 31.189 kb on - strand, within AO356_00170 at 31.266 kb on + strand, within AO356_00170 at 31.319 kb on + strand, within AO356_00170 at 31.437 kb on + strand at 31.461 kb on - strand at 31.461 kb on - strand at 31.554 kb on + strand, within AO356_00175 at 31.554 kb on + strand, within AO356_00175 at 31.555 kb on - strand, within AO356_00175 at 31.555 kb on - strand, within AO356_00175 at 31.689 kb on - strand, within AO356_00175 at 31.845 kb on + strand, within AO356_00175 at 31.845 kb on + strand, within AO356_00175 at 31.846 kb on - strand, within AO356_00175 at 31.898 kb on - strand at 31.993 kb on + strand at 31.993 kb on + strand at 31.994 kb on - strand at 31.994 kb on - strand at 31.994 kb on - strand at 31.994 kb on - strand at 32.000 kb on + strand at 32.035 kb on + strand at 32.092 kb on + strand at 32.093 kb on - strand at 32.094 kb on + strand at 32.146 kb on - strand at 32.146 kb on - strand at 32.155 kb on - strand at 32.373 kb on + strand, within AO356_00180 at 32.374 kb on - strand, within AO356_00180 at 32.453 kb on + strand, within AO356_00180 at 32.454 kb on - strand, within AO356_00180 at 32.567 kb on - strand, within AO356_00180 at 32.567 kb on - strand, within AO356_00180 at 32.567 kb on - strand, within AO356_00180 at 32.604 kb on - strand, within AO356_00180 at 32.604 kb on - strand, within AO356_00180 at 32.604 kb on - strand, within AO356_00180 at 32.622 kb on + strand, within AO356_00180 at 32.653 kb on + strand, within AO356_00180 at 32.654 kb on - strand, within AO356_00180 at 32.654 kb on - strand, within AO356_00180 at 32.654 kb on - strand, within AO356_00180 at 32.654 kb on - strand, within AO356_00180 at 32.654 kb on - strand, within AO356_00180 at 32.692 kb on + strand, within AO356_00180 at 32.693 kb on - strand, within AO356_00180 at 32.706 kb on - strand, within AO356_00180 at 32.731 kb on + strand, within AO356_00180 at 32.732 kb on - strand, within AO356_00180
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 30,472 + AO356_00165 0.41 -1.2 30,473 - AO356_00165 0.42 +0.4 30,522 + AO356_00165 0.48 +0.5 30,522 + AO356_00165 0.48 -0.1 30,523 - AO356_00165 0.48 +0.3 30,629 - AO356_00165 0.63 +0.3 30,629 - AO356_00165 0.63 -0.1 30,696 - AO356_00165 0.72 +0.8 30,699 + AO356_00165 0.73 +0.0 30,699 + AO356_00165 0.73 -0.2 30,699 + AO356_00165 0.73 -0.3 30,699 + AO356_00165 0.73 +0.1 30,699 + AO356_00165 0.73 +0.9 30,700 - AO356_00165 0.73 -0.8 30,700 - AO356_00165 0.73 +0.3 30,700 - AO356_00165 0.73 -0.2 30,700 - AO356_00165 0.73 -0.4 30,703 + AO356_00165 0.73 -0.2 30,703 + AO356_00165 0.73 +0.4 30,703 + AO356_00165 0.73 +0.0 30,704 - AO356_00165 0.74 +0.2 30,792 - AO356_00165 0.86 +0.6 30,898 + +0.1 31,126 - AO356_00170 0.46 +0.6 31,189 - AO356_00170 0.57 +0.5 31,266 + AO356_00170 0.71 -0.2 31,319 + AO356_00170 0.81 -1.3 31,437 + +0.4 31,461 - +1.0 31,461 - +0.0 31,554 + AO356_00175 0.26 -0.7 31,554 + AO356_00175 0.26 +0.0 31,555 - AO356_00175 0.26 +0.0 31,555 - AO356_00175 0.26 +0.4 31,689 - AO356_00175 0.52 -0.8 31,845 + AO356_00175 0.82 -1.3 31,845 + AO356_00175 0.82 +0.1 31,846 - AO356_00175 0.83 +0.4 31,898 - +0.6 31,993 + +0.9 31,993 + -0.8 31,994 - -0.5 31,994 - +0.7 31,994 - +0.2 31,994 - -1.2 32,000 + -1.0 32,035 + -0.9 32,092 + +0.8 32,093 - +0.2 32,094 + +0.6 32,146 - +0.0 32,146 - +0.7 32,155 - +0.3 32,373 + AO356_00180 0.20 -0.4 32,374 - AO356_00180 0.20 -0.5 32,453 + AO356_00180 0.24 -1.0 32,454 - AO356_00180 0.24 +0.8 32,567 - AO356_00180 0.30 -0.2 32,567 - AO356_00180 0.30 +2.1 32,567 - AO356_00180 0.30 +0.3 32,604 - AO356_00180 0.31 -0.4 32,604 - AO356_00180 0.31 +0.1 32,604 - AO356_00180 0.31 +0.6 32,622 + AO356_00180 0.32 -0.0 32,653 + AO356_00180 0.34 +0.3 32,654 - AO356_00180 0.34 +0.2 32,654 - AO356_00180 0.34 +0.3 32,654 - AO356_00180 0.34 -0.8 32,654 - AO356_00180 0.34 +0.2 32,654 - AO356_00180 0.34 +0.5 32,692 + AO356_00180 0.35 +0.0 32,693 - AO356_00180 0.36 -0.6 32,706 - AO356_00180 0.36 -0.8 32,731 + AO356_00180 0.37 +0.1 32,732 - AO356_00180 0.37 -0.9
Or see this region's nucleotide sequence