Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3032

Experiment: MoYLS4 with Rifampicin 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3031 and DvMF_3032 are separated by 267 nucleotidesDvMF_3032 and DvMF_3033 are separated by 131 nucleotides DvMF_3031: DvMF_3031 - intracellular protease, PfpI family (RefSeq), at 3,825,477 to 3,826,064 _3031 DvMF_3032: DvMF_3032 - dienelactone hydrolase (RefSeq), at 3,826,332 to 3,827,222 _3032 DvMF_3033: DvMF_3033 - hypothetical protein (RefSeq), at 3,827,354 to 3,828,250 _3033 Position (kb) 3826 3827 3828Strain fitness (log2 ratio) -2 -1 0 1at 3825.470 kb on - strandat 3825.473 kb on + strandat 3825.632 kb on - strand, within DvMF_3031at 3825.673 kb on + strand, within DvMF_3031at 3825.716 kb on + strand, within DvMF_3031at 3825.761 kb on - strand, within DvMF_3031at 3825.763 kb on + strand, within DvMF_3031at 3825.878 kb on + strand, within DvMF_3031at 3825.886 kb on - strand, within DvMF_3031at 3826.018 kb on - strandat 3826.059 kb on + strandat 3826.486 kb on - strand, within DvMF_3032at 3826.696 kb on - strand, within DvMF_3032at 3826.767 kb on - strand, within DvMF_3032at 3826.969 kb on + strand, within DvMF_3032at 3826.969 kb on + strand, within DvMF_3032at 3826.982 kb on - strand, within DvMF_3032at 3827.202 kb on + strandat 3827.252 kb on - strandat 3827.300 kb on + strandat 3827.324 kb on + strandat 3827.437 kb on + strandat 3827.441 kb on + strandat 3827.520 kb on - strand, within DvMF_3033at 3827.749 kb on + strand, within DvMF_3033at 3827.916 kb on + strand, within DvMF_3033at 3827.924 kb on - strand, within DvMF_3033at 3827.939 kb on + strand, within DvMF_3033at 3828.134 kb on + strand, within DvMF_3033at 3828.142 kb on - strand, within DvMF_3033at 3828.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml
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3,825,470 - -0.4
3,825,473 + -0.8
3,825,632 - DvMF_3031 0.26 +1.2
3,825,673 + DvMF_3031 0.33 -0.5
3,825,716 + DvMF_3031 0.41 -0.4
3,825,761 - DvMF_3031 0.48 -0.5
3,825,763 + DvMF_3031 0.49 -1.2
3,825,878 + DvMF_3031 0.68 -0.5
3,825,886 - DvMF_3031 0.70 -1.1
3,826,018 - -2.7
3,826,059 + -0.6
3,826,486 - DvMF_3032 0.17 +0.2
3,826,696 - DvMF_3032 0.41 -0.1
3,826,767 - DvMF_3032 0.49 -0.3
3,826,969 + DvMF_3032 0.71 +0.3
3,826,969 + DvMF_3032 0.71 +0.1
3,826,982 - DvMF_3032 0.73 -0.6
3,827,202 + -1.5
3,827,252 - -0.1
3,827,300 + -1.4
3,827,324 + +0.0
3,827,437 + -1.3
3,827,441 + -1.3
3,827,520 - DvMF_3033 0.19 -0.3
3,827,749 + DvMF_3033 0.44 -1.7
3,827,916 + DvMF_3033 0.63 -0.2
3,827,924 - DvMF_3033 0.64 +1.0
3,827,939 + DvMF_3033 0.65 +0.7
3,828,134 + DvMF_3033 0.87 -0.4
3,828,142 - DvMF_3033 0.88 -1.9
3,828,202 - +1.0

Or see this region's nucleotide sequence