Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2940

Experiment: MoYLS4 with Rifampicin 0.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2939 and DvMF_2940 are separated by 276 nucleotidesDvMF_2940 and DvMF_2941 are separated by 171 nucleotides DvMF_2939: DvMF_2939 - response regulator receiver modulated CheW protein (RefSeq), at 3,710,745 to 3,711,716 _2939 DvMF_2940: DvMF_2940 - type IV pilus assembly PilZ (RefSeq), at 3,711,993 to 3,712,325 _2940 DvMF_2941: DvMF_2941 - S-adenosylmethionine synthetase (RefSeq), at 3,712,497 to 3,713,666 _2941 Position (kb) 3711 3712 3713Strain fitness (log2 ratio) -1 0 1at 3711.709 kb on - strandat 3712.201 kb on + strand, within DvMF_2940at 3712.214 kb on + strand, within DvMF_2940at 3712.476 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml
remove
3,711,709 - -0.9
3,712,201 + DvMF_2940 0.62 -0.0
3,712,214 + DvMF_2940 0.66 -0.6
3,712,476 - -0.0

Or see this region's nucleotide sequence