Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2797

Experiment: MoYLS4 with Rifampicin 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2796 and DvMF_2797 are separated by 0 nucleotidesDvMF_2797 and DvMF_2798 are separated by 64 nucleotidesDvMF_2798 and DvMF_2799 are separated by 315 nucleotides DvMF_2796: DvMF_2796 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 3,539,711 to 3,541,453 _2796 DvMF_2797: DvMF_2797 - hypothetical protein (RefSeq), at 3,541,454 to 3,542,044 _2797 DvMF_2798: DvMF_2798 - transcription activator effector binding (RefSeq), at 3,542,109 to 3,542,579 _2798 DvMF_2799: DvMF_2799 - histone family protein DNA-binding protein (RefSeq), at 3,542,895 to 3,543,170 _2799 Position (kb) 3541 3542 3543Strain fitness (log2 ratio) -2 -1 0 1at 3540.693 kb on + strand, within DvMF_2796at 3540.923 kb on - strand, within DvMF_2796at 3541.159 kb on - strand, within DvMF_2796at 3541.364 kb on - strandat 3541.670 kb on - strand, within DvMF_2797at 3541.726 kb on + strand, within DvMF_2797at 3541.946 kb on - strand, within DvMF_2797at 3542.006 kb on - strandat 3542.041 kb on + strandat 3542.122 kb on - strandat 3542.137 kb on - strandat 3542.244 kb on - strand, within DvMF_2798at 3542.600 kb on - strandat 3542.788 kb on + strandat 3542.830 kb on - strandat 3543.043 kb on + strand, within DvMF_2799

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml
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3,540,693 + DvMF_2796 0.56 -0.9
3,540,923 - DvMF_2796 0.70 -0.3
3,541,159 - DvMF_2796 0.83 -1.0
3,541,364 - -1.2
3,541,670 - DvMF_2797 0.37 -2.3
3,541,726 + DvMF_2797 0.46 -1.0
3,541,946 - DvMF_2797 0.83 -1.3
3,542,006 - -1.1
3,542,041 + -2.0
3,542,122 - -0.3
3,542,137 - -1.4
3,542,244 - DvMF_2798 0.29 -0.8
3,542,600 - -0.2
3,542,788 + +0.6
3,542,830 - -0.9
3,543,043 + DvMF_2799 0.54 +0.1

Or see this region's nucleotide sequence