Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2796 and DvMF_2797 are separated by 0 nucleotides DvMF_2797 and DvMF_2798 are separated by 64 nucleotides DvMF_2798 and DvMF_2799 are separated by 315 nucleotides
DvMF_2796: DvMF_2796 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 3,539,711 to 3,541,453
_2796
DvMF_2797: DvMF_2797 - hypothetical protein (RefSeq), at 3,541,454 to 3,542,044
_2797
DvMF_2798: DvMF_2798 - transcription activator effector binding (RefSeq), at 3,542,109 to 3,542,579
_2798
DvMF_2799: DvMF_2799 - histone family protein DNA-binding protein (RefSeq), at 3,542,895 to 3,543,170
_2799
Position (kb)
3541
3542
3543 Strain fitness (log2 ratio)
-2
-1
0
1 at 3540.693 kb on + strand, within DvMF_2796 at 3540.923 kb on - strand, within DvMF_2796 at 3541.159 kb on - strand, within DvMF_2796 at 3541.364 kb on - strand at 3541.670 kb on - strand, within DvMF_2797 at 3541.726 kb on + strand, within DvMF_2797 at 3541.946 kb on - strand, within DvMF_2797 at 3542.006 kb on - strand at 3542.041 kb on + strand at 3542.122 kb on - strand at 3542.137 kb on - strand at 3542.244 kb on - strand, within DvMF_2798 at 3542.600 kb on - strand at 3542.788 kb on + strand at 3542.830 kb on - strand at 3543.043 kb on + strand, within DvMF_2799
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 3,540,693 + DvMF_2796 0.56 -0.9 3,540,923 - DvMF_2796 0.70 -0.3 3,541,159 - DvMF_2796 0.83 -1.0 3,541,364 - -1.2 3,541,670 - DvMF_2797 0.37 -2.3 3,541,726 + DvMF_2797 0.46 -1.0 3,541,946 - DvMF_2797 0.83 -1.3 3,542,006 - -1.1 3,542,041 + -2.0 3,542,122 - -0.3 3,542,137 - -1.4 3,542,244 - DvMF_2798 0.29 -0.8 3,542,600 - -0.2 3,542,788 + +0.6 3,542,830 - -0.9 3,543,043 + DvMF_2799 0.54 +0.1
Or see this region's nucleotide sequence