Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2713 and DvMF_2714 are separated by 15 nucleotides DvMF_2714 and DvMF_2715 are separated by 483 nucleotides
DvMF_2713: DvMF_2713 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 3,434,744 to 3,436,714
_2713
DvMF_2714: DvMF_2714 - protein of unknown function DUF362 (RefSeq), at 3,436,730 to 3,437,710
_2714
DvMF_2715: DvMF_2715 - hypothetical protein (RefSeq), at 3,438,194 to 3,438,523
_2715
Position (kb)
3436
3437
3438 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3435.845 kb on - strand, within DvMF_2713 at 3435.870 kb on + strand, within DvMF_2713 at 3435.880 kb on + strand, within DvMF_2713 at 3435.951 kb on + strand, within DvMF_2713 at 3436.136 kb on + strand, within DvMF_2713 at 3436.238 kb on - strand, within DvMF_2713 at 3436.318 kb on - strand, within DvMF_2713 at 3436.347 kb on - strand, within DvMF_2713 at 3436.421 kb on + strand, within DvMF_2713 at 3436.421 kb on + strand, within DvMF_2713 at 3436.451 kb on + strand, within DvMF_2713 at 3436.565 kb on + strand at 3436.639 kb on - strand at 3436.773 kb on - strand at 3436.907 kb on + strand, within DvMF_2714 at 3437.234 kb on - strand, within DvMF_2714 at 3437.323 kb on - strand, within DvMF_2714 at 3437.463 kb on + strand, within DvMF_2714 at 3437.495 kb on + strand, within DvMF_2714 at 3437.528 kb on - strand, within DvMF_2714 at 3437.544 kb on - strand, within DvMF_2714 at 3437.544 kb on - strand, within DvMF_2714 at 3437.833 kb on + strand at 3437.937 kb on + strand at 3437.937 kb on + strand at 3438.103 kb on + strand at 3438.253 kb on + strand, within DvMF_2715 at 3438.314 kb on + strand, within DvMF_2715 at 3438.411 kb on + strand, within DvMF_2715
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 3,435,845 - DvMF_2713 0.56 -4.0 3,435,870 + DvMF_2713 0.57 -2.2 3,435,880 + DvMF_2713 0.58 +0.1 3,435,951 + DvMF_2713 0.61 -3.2 3,436,136 + DvMF_2713 0.71 -0.8 3,436,238 - DvMF_2713 0.76 -0.7 3,436,318 - DvMF_2713 0.80 -1.0 3,436,347 - DvMF_2713 0.81 +0.2 3,436,421 + DvMF_2713 0.85 -0.6 3,436,421 + DvMF_2713 0.85 -0.9 3,436,451 + DvMF_2713 0.87 +0.0 3,436,565 + -1.2 3,436,639 - -0.8 3,436,773 - -0.7 3,436,907 + DvMF_2714 0.18 -0.2 3,437,234 - DvMF_2714 0.51 -1.3 3,437,323 - DvMF_2714 0.60 -2.1 3,437,463 + DvMF_2714 0.75 -0.6 3,437,495 + DvMF_2714 0.78 -0.7 3,437,528 - DvMF_2714 0.81 +0.5 3,437,544 - DvMF_2714 0.83 -2.2 3,437,544 - DvMF_2714 0.83 -3.6 3,437,833 + -0.3 3,437,937 + -1.9 3,437,937 + -1.5 3,438,103 + -3.7 3,438,253 + DvMF_2715 0.18 -0.6 3,438,314 + DvMF_2715 0.36 -1.1 3,438,411 + DvMF_2715 0.66 -0.4
Or see this region's nucleotide sequence