Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2659

Experiment: MoYLS4 with Rifampicin 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2658 and DvMF_2659 are separated by 201 nucleotidesDvMF_2659 and DvMF_2660 overlap by 4 nucleotides DvMF_2658: DvMF_2658 - cysteine synthase (RefSeq), at 3,357,529 to 3,358,461 _2658 DvMF_2659: DvMF_2659 - cysteine desulfurase NifS (RefSeq), at 3,358,663 to 3,359,877 _2659 DvMF_2660: DvMF_2660 - Fe-S cluster assembly protein NifU (RefSeq), at 3,359,874 to 3,360,719 _2660 Position (kb) 3358 3359 3360Strain fitness (log2 ratio) -3 -2 -1 0 1at 3358.587 kb on - strandat 3358.670 kb on - strandat 3358.694 kb on + strandat 3358.702 kb on - strandat 3358.702 kb on - strandat 3358.702 kb on - strandat 3358.789 kb on + strand, within DvMF_2659at 3358.895 kb on - strand, within DvMF_2659at 3358.895 kb on - strand, within DvMF_2659at 3359.095 kb on + strand, within DvMF_2659at 3359.219 kb on - strand, within DvMF_2659at 3359.252 kb on + strand, within DvMF_2659at 3359.327 kb on - strand, within DvMF_2659at 3359.516 kb on + strand, within DvMF_2659at 3359.663 kb on + strand, within DvMF_2659at 3359.687 kb on - strand, within DvMF_2659at 3359.872 kb on + strandat 3359.941 kb on - strandat 3359.948 kb on - strandat 3360.162 kb on + strand, within DvMF_2660at 3360.165 kb on - strand, within DvMF_2660at 3360.475 kb on - strand, within DvMF_2660at 3360.493 kb on + strand, within DvMF_2660at 3360.515 kb on - strand, within DvMF_2660at 3360.651 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml
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3,358,587 - +0.0
3,358,670 - -0.8
3,358,694 + -1.2
3,358,702 - -0.2
3,358,702 - -0.7
3,358,702 - -0.4
3,358,789 + DvMF_2659 0.10 +0.1
3,358,895 - DvMF_2659 0.19 -3.5
3,358,895 - DvMF_2659 0.19 -1.0
3,359,095 + DvMF_2659 0.36 -1.4
3,359,219 - DvMF_2659 0.46 -1.5
3,359,252 + DvMF_2659 0.48 +0.4
3,359,327 - DvMF_2659 0.55 -3.1
3,359,516 + DvMF_2659 0.70 +0.4
3,359,663 + DvMF_2659 0.82 +0.0
3,359,687 - DvMF_2659 0.84 -1.1
3,359,872 + -2.0
3,359,941 - +0.9
3,359,948 - -0.6
3,360,162 + DvMF_2660 0.34 -0.7
3,360,165 - DvMF_2660 0.34 +0.1
3,360,475 - DvMF_2660 0.71 -1.3
3,360,493 + DvMF_2660 0.73 -0.6
3,360,515 - DvMF_2660 0.76 -0.5
3,360,651 - -2.7

Or see this region's nucleotide sequence