Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2444

Experiment: MoYLS4 with Rifampicin 0.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2442 and DvMF_R0068 are separated by 111 nucleotidesDvMF_R0068 and DvMF_2443 are separated by 212 nucleotidesDvMF_2443 and DvMF_2444 are separated by 6 nucleotidesDvMF_2444 and DvMF_2445 are separated by 193 nucleotides DvMF_2442: DvMF_2442 - Lytic transglycosylase catalytic (RefSeq), at 3,075,945 to 3,076,682 _2442 DvMF_R0068: DvMF_R0068 - tRNA-Phe (RefSeq), at 3,076,794 to 3,076,869 _R0068 DvMF_2443: DvMF_2443 - hypothetical protein (RefSeq), at 3,077,082 to 3,077,657 _2443 DvMF_2444: DvMF_2444 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,077,664 to 3,078,584 _2444 DvMF_2445: DvMF_2445 - HPP family protein (RefSeq), at 3,078,778 to 3,079,386 _2445 Position (kb) 3077 3078 3079Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3076.745 kb on - strandat 3076.747 kb on - strandat 3077.080 kb on + strandat 3077.136 kb on + strandat 3077.159 kb on - strand, within DvMF_2443at 3077.238 kb on + strand, within DvMF_2443at 3077.240 kb on - strand, within DvMF_2443at 3077.252 kb on + strand, within DvMF_2443at 3077.351 kb on - strand, within DvMF_2443at 3077.496 kb on - strand, within DvMF_2443at 3077.851 kb on + strand, within DvMF_2444at 3077.870 kb on + strand, within DvMF_2444at 3078.040 kb on + strand, within DvMF_2444at 3078.145 kb on - strand, within DvMF_2444at 3078.162 kb on + strand, within DvMF_2444at 3078.384 kb on - strand, within DvMF_2444at 3078.489 kb on + strand, within DvMF_2444at 3078.664 kb on - strandat 3078.832 kb on + strandat 3079.005 kb on - strand, within DvMF_2445at 3079.102 kb on - strand, within DvMF_2445at 3079.318 kb on - strand, within DvMF_2445at 3079.318 kb on - strand, within DvMF_2445at 3079.323 kb on + strand, within DvMF_2445at 3079.540 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml
remove
3,076,745 - -0.4
3,076,747 - -0.6
3,077,080 + -0.5
3,077,136 + -0.4
3,077,159 - DvMF_2443 0.13 -2.5
3,077,238 + DvMF_2443 0.27 +0.1
3,077,240 - DvMF_2443 0.27 -4.4
3,077,252 + DvMF_2443 0.30 +0.7
3,077,351 - DvMF_2443 0.47 +0.5
3,077,496 - DvMF_2443 0.72 +0.6
3,077,851 + DvMF_2444 0.20 -0.4
3,077,870 + DvMF_2444 0.22 -1.0
3,078,040 + DvMF_2444 0.41 -1.7
3,078,145 - DvMF_2444 0.52 +1.0
3,078,162 + DvMF_2444 0.54 -1.0
3,078,384 - DvMF_2444 0.78 -0.1
3,078,489 + DvMF_2444 0.90 +0.1
3,078,664 - -1.0
3,078,832 + -0.3
3,079,005 - DvMF_2445 0.37 -0.8
3,079,102 - DvMF_2445 0.53 -3.7
3,079,318 - DvMF_2445 0.89 -0.2
3,079,318 - DvMF_2445 0.89 -3.0
3,079,323 + DvMF_2445 0.89 -0.6
3,079,540 + -2.4

Or see this region's nucleotide sequence