Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2438

Experiment: MoYLS4 with Rifampicin 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2436 and DvMF_2437 are separated by 11 nucleotidesDvMF_2437 and DvMF_2438 overlap by 8 nucleotidesDvMF_2438 and DvMF_2439 overlap by 4 nucleotidesDvMF_2439 and DvMF_2440 are separated by 29 nucleotides DvMF_2436: DvMF_2436 - type III secretion YscO fmaily protein (RefSeq), at 3,071,534 to 3,072,037 _2436 DvMF_2437: DvMF_2437 - type III secretion system needle length determinant (RefSeq), at 3,072,049 to 3,072,813 _2437 DvMF_2438: DvMF_2438 - type III secretion system apparatus protein YscQ/HrcQ (RefSeq), at 3,072,806 to 3,074,035 _2438 DvMF_2439: DvMF_2439 - type III secretion system protein (RefSeq), at 3,074,032 to 3,074,682 _2439 DvMF_2440: DvMF_2440 - anti-sigma-factor antagonist (RefSeq), at 3,074,712 to 3,075,047 _2440 Position (kb) 3072 3073 3074 3075Strain fitness (log2 ratio) -3 -2 -1 0 1at 3071.835 kb on + strand, within DvMF_2436at 3071.902 kb on + strand, within DvMF_2436at 3071.986 kb on + strand, within DvMF_2436at 3071.994 kb on - strandat 3071.994 kb on - strandat 3072.167 kb on + strand, within DvMF_2437at 3072.292 kb on - strand, within DvMF_2437at 3072.470 kb on + strand, within DvMF_2437at 3072.600 kb on + strand, within DvMF_2437at 3072.725 kb on - strand, within DvMF_2437at 3072.807 kb on - strandat 3072.850 kb on - strandat 3072.914 kb on - strandat 3072.916 kb on + strandat 3072.930 kb on + strand, within DvMF_2438at 3072.938 kb on - strand, within DvMF_2438at 3073.076 kb on - strand, within DvMF_2438at 3073.432 kb on + strand, within DvMF_2438at 3073.461 kb on + strand, within DvMF_2438at 3073.806 kb on + strand, within DvMF_2438at 3073.999 kb on + strandat 3074.089 kb on - strandat 3074.484 kb on + strand, within DvMF_2439at 3074.492 kb on - strand, within DvMF_2439at 3074.624 kb on + strandat 3074.720 kb on + strandat 3074.720 kb on + strandat 3074.730 kb on + strandat 3074.865 kb on - strand, within DvMF_2440at 3074.865 kb on - strand, within DvMF_2440at 3074.911 kb on - strand, within DvMF_2440at 3074.926 kb on + strand, within DvMF_2440

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml
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3,071,835 + DvMF_2436 0.60 -1.0
3,071,902 + DvMF_2436 0.73 -0.9
3,071,986 + DvMF_2436 0.90 -0.7
3,071,994 - +0.1
3,071,994 - -0.5
3,072,167 + DvMF_2437 0.15 +0.2
3,072,292 - DvMF_2437 0.32 -0.6
3,072,470 + DvMF_2437 0.55 -0.1
3,072,600 + DvMF_2437 0.72 -1.1
3,072,725 - DvMF_2437 0.88 -3.3
3,072,807 - -2.0
3,072,850 - -1.3
3,072,914 - -0.0
3,072,916 + -0.4
3,072,930 + DvMF_2438 0.10 -1.6
3,072,938 - DvMF_2438 0.11 -2.3
3,073,076 - DvMF_2438 0.22 -1.4
3,073,432 + DvMF_2438 0.51 -0.3
3,073,461 + DvMF_2438 0.53 -0.7
3,073,806 + DvMF_2438 0.81 -0.6
3,073,999 + -0.4
3,074,089 - -1.0
3,074,484 + DvMF_2439 0.69 +0.0
3,074,492 - DvMF_2439 0.71 +0.5
3,074,624 + -1.9
3,074,720 + -0.1
3,074,720 + -1.1
3,074,730 + -1.1
3,074,865 - DvMF_2440 0.46 -1.0
3,074,865 - DvMF_2440 0.46 -3.7
3,074,911 - DvMF_2440 0.59 -0.5
3,074,926 + DvMF_2440 0.64 -1.3

Or see this region's nucleotide sequence