Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2436 and DvMF_2437 are separated by 11 nucleotides DvMF_2437 and DvMF_2438 overlap by 8 nucleotides DvMF_2438 and DvMF_2439 overlap by 4 nucleotides DvMF_2439 and DvMF_2440 are separated by 29 nucleotides
DvMF_2436: DvMF_2436 - type III secretion YscO fmaily protein (RefSeq), at 3,071,534 to 3,072,037
_2436
DvMF_2437: DvMF_2437 - type III secretion system needle length determinant (RefSeq), at 3,072,049 to 3,072,813
_2437
DvMF_2438: DvMF_2438 - type III secretion system apparatus protein YscQ/HrcQ (RefSeq), at 3,072,806 to 3,074,035
_2438
DvMF_2439: DvMF_2439 - type III secretion system protein (RefSeq), at 3,074,032 to 3,074,682
_2439
DvMF_2440: DvMF_2440 - anti-sigma-factor antagonist (RefSeq), at 3,074,712 to 3,075,047
_2440
Position (kb)
3072
3073
3074
3075 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3071.835 kb on + strand, within DvMF_2436 at 3071.902 kb on + strand, within DvMF_2436 at 3071.986 kb on + strand, within DvMF_2436 at 3071.994 kb on - strand at 3071.994 kb on - strand at 3072.167 kb on + strand, within DvMF_2437 at 3072.292 kb on - strand, within DvMF_2437 at 3072.470 kb on + strand, within DvMF_2437 at 3072.600 kb on + strand, within DvMF_2437 at 3072.725 kb on - strand, within DvMF_2437 at 3072.807 kb on - strand at 3072.850 kb on - strand at 3072.914 kb on - strand at 3072.916 kb on + strand at 3072.930 kb on + strand, within DvMF_2438 at 3072.938 kb on - strand, within DvMF_2438 at 3073.076 kb on - strand, within DvMF_2438 at 3073.432 kb on + strand, within DvMF_2438 at 3073.461 kb on + strand, within DvMF_2438 at 3073.806 kb on + strand, within DvMF_2438 at 3073.999 kb on + strand at 3074.089 kb on - strand at 3074.484 kb on + strand, within DvMF_2439 at 3074.492 kb on - strand, within DvMF_2439 at 3074.624 kb on + strand at 3074.720 kb on + strand at 3074.720 kb on + strand at 3074.730 kb on + strand at 3074.865 kb on - strand, within DvMF_2440 at 3074.865 kb on - strand, within DvMF_2440 at 3074.911 kb on - strand, within DvMF_2440 at 3074.926 kb on + strand, within DvMF_2440
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 3,071,835 + DvMF_2436 0.60 -1.0 3,071,902 + DvMF_2436 0.73 -0.9 3,071,986 + DvMF_2436 0.90 -0.7 3,071,994 - +0.1 3,071,994 - -0.5 3,072,167 + DvMF_2437 0.15 +0.2 3,072,292 - DvMF_2437 0.32 -0.6 3,072,470 + DvMF_2437 0.55 -0.1 3,072,600 + DvMF_2437 0.72 -1.1 3,072,725 - DvMF_2437 0.88 -3.3 3,072,807 - -2.0 3,072,850 - -1.3 3,072,914 - -0.0 3,072,916 + -0.4 3,072,930 + DvMF_2438 0.10 -1.6 3,072,938 - DvMF_2438 0.11 -2.3 3,073,076 - DvMF_2438 0.22 -1.4 3,073,432 + DvMF_2438 0.51 -0.3 3,073,461 + DvMF_2438 0.53 -0.7 3,073,806 + DvMF_2438 0.81 -0.6 3,073,999 + -0.4 3,074,089 - -1.0 3,074,484 + DvMF_2439 0.69 +0.0 3,074,492 - DvMF_2439 0.71 +0.5 3,074,624 + -1.9 3,074,720 + -0.1 3,074,720 + -1.1 3,074,730 + -1.1 3,074,865 - DvMF_2440 0.46 -1.0 3,074,865 - DvMF_2440 0.46 -3.7 3,074,911 - DvMF_2440 0.59 -0.5 3,074,926 + DvMF_2440 0.64 -1.3
Or see this region's nucleotide sequence