Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2421 and DvMF_2422 are separated by 97 nucleotides DvMF_2422 and DvMF_2423 overlap by 4 nucleotides DvMF_2423 and DvMF_2424 are separated by 10 nucleotides DvMF_2424 and DvMF_2425 are separated by 83 nucleotides
DvMF_2421: DvMF_2421 - hypothetical protein (RefSeq), at 3,058,804 to 3,059,316
_2421
DvMF_2422: DvMF_2422 - type III secretion low calcium response chaperone LcrH/SycD (RefSeq), at 3,059,414 to 3,059,917
_2422
DvMF_2423: DvMF_2423 - hypothetical protein (RefSeq), at 3,059,914 to 3,060,930
_2423
DvMF_2424: DvMF_2424 - hypothetical protein (RefSeq), at 3,060,941 to 3,061,774
_2424
DvMF_2425: DvMF_2425 - hypothetical protein (RefSeq), at 3,061,858 to 3,062,364
_2425
Position (kb)
3059
3060
3061 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3059.228 kb on - strand, within DvMF_2421 at 3059.228 kb on - strand, within DvMF_2421 at 3059.228 kb on - strand, within DvMF_2421 at 3059.238 kb on - strand, within DvMF_2421 at 3059.480 kb on - strand, within DvMF_2422 at 3059.515 kb on + strand, within DvMF_2422 at 3059.875 kb on + strand at 3059.877 kb on - strand at 3059.964 kb on - strand at 3060.044 kb on - strand, within DvMF_2423 at 3060.171 kb on + strand, within DvMF_2423 at 3060.195 kb on + strand, within DvMF_2423 at 3060.260 kb on - strand, within DvMF_2423 at 3060.345 kb on - strand, within DvMF_2423 at 3060.482 kb on - strand, within DvMF_2423 at 3060.715 kb on - strand, within DvMF_2423 at 3061.011 kb on - strand at 3061.125 kb on + strand, within DvMF_2424 at 3061.262 kb on + strand, within DvMF_2424 at 3061.269 kb on - strand, within DvMF_2424 at 3061.382 kb on + strand, within DvMF_2424 at 3061.383 kb on - strand, within DvMF_2424 at 3061.586 kb on - strand, within DvMF_2424 at 3061.736 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 3,059,228 - DvMF_2421 0.83 -0.7 3,059,228 - DvMF_2421 0.83 -0.2 3,059,228 - DvMF_2421 0.83 -0.5 3,059,238 - DvMF_2421 0.85 -4.1 3,059,480 - DvMF_2422 0.13 -0.9 3,059,515 + DvMF_2422 0.20 -0.2 3,059,875 + -1.0 3,059,877 - -1.9 3,059,964 - -1.1 3,060,044 - DvMF_2423 0.13 -1.1 3,060,171 + DvMF_2423 0.25 -0.4 3,060,195 + DvMF_2423 0.28 -1.3 3,060,260 - DvMF_2423 0.34 -0.9 3,060,345 - DvMF_2423 0.42 -1.7 3,060,482 - DvMF_2423 0.56 -1.8 3,060,715 - DvMF_2423 0.79 -0.6 3,061,011 - +0.1 3,061,125 + DvMF_2424 0.22 +0.3 3,061,262 + DvMF_2424 0.38 -0.4 3,061,269 - DvMF_2424 0.39 -0.6 3,061,382 + DvMF_2424 0.53 -0.8 3,061,383 - DvMF_2424 0.53 -0.9 3,061,586 - DvMF_2424 0.77 -0.2 3,061,736 - -0.9
Or see this region's nucleotide sequence