Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2398

Experiment: MoYLS4 with Rifampicin 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2397 and DvMF_2398 are separated by 438 nucleotidesDvMF_2398 and DvMF_2399 are separated by 11 nucleotides DvMF_2397: DvMF_2397 - hypothetical protein (RefSeq), at 3,029,746 to 3,030,570 _2397 DvMF_2398: DvMF_2398 - ABC transporter related (RefSeq), at 3,031,009 to 3,031,941 _2398 DvMF_2399: DvMF_2399 - ABC transporter related (RefSeq), at 3,031,953 to 3,032,975 _2399 Position (kb) 3031 3032Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3030.459 kb on + strand, within DvMF_2397at 3030.589 kb on - strandat 3030.644 kb on - strandat 3030.656 kb on - strandat 3030.738 kb on - strandat 3030.890 kb on + strandat 3031.122 kb on - strand, within DvMF_2398at 3031.324 kb on + strand, within DvMF_2398at 3031.337 kb on - strand, within DvMF_2398at 3031.750 kb on - strand, within DvMF_2398at 3031.775 kb on - strand, within DvMF_2398at 3031.918 kb on + strandat 3032.117 kb on + strand, within DvMF_2399at 3032.182 kb on - strand, within DvMF_2399at 3032.231 kb on - strand, within DvMF_2399at 3032.621 kb on + strand, within DvMF_2399at 3032.625 kb on - strand, within DvMF_2399

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml
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3,030,459 + DvMF_2397 0.86 -4.6
3,030,589 - -1.5
3,030,644 - -0.5
3,030,656 - -0.9
3,030,738 - -0.8
3,030,890 + -2.6
3,031,122 - DvMF_2398 0.12 -1.0
3,031,324 + DvMF_2398 0.34 -1.8
3,031,337 - DvMF_2398 0.35 -0.3
3,031,750 - DvMF_2398 0.79 -1.8
3,031,775 - DvMF_2398 0.82 -0.2
3,031,918 + -0.1
3,032,117 + DvMF_2399 0.16 -1.6
3,032,182 - DvMF_2399 0.22 -0.9
3,032,231 - DvMF_2399 0.27 -0.3
3,032,621 + DvMF_2399 0.65 -2.7
3,032,625 - DvMF_2399 0.66 -0.4

Or see this region's nucleotide sequence