Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2330

Experiment: MoYLS4 with Rifampicin 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2329 and DvMF_2330 are separated by 69 nucleotidesDvMF_2330 and DvMF_2331 are separated by 327 nucleotides DvMF_2329: DvMF_2329 - glycosyl transferase family 2 (RefSeq), at 2,936,549 to 2,937,583 _2329 DvMF_2330: DvMF_2330 - PP-loop domain protein (RefSeq), at 2,937,653 to 2,938,588 _2330 DvMF_2331: DvMF_2331 - hypothetical protein (RefSeq), at 2,938,916 to 2,939,167 _2331 Position (kb) 2937 2938 2939Strain fitness (log2 ratio) -3 -2 -1 0 1at 2936.728 kb on + strand, within DvMF_2329at 2936.728 kb on + strand, within DvMF_2329at 2936.754 kb on + strand, within DvMF_2329at 2936.899 kb on - strand, within DvMF_2329at 2937.056 kb on + strand, within DvMF_2329at 2937.061 kb on + strand, within DvMF_2329at 2937.323 kb on + strand, within DvMF_2329at 2937.429 kb on - strand, within DvMF_2329at 2937.772 kb on + strand, within DvMF_2330at 2938.047 kb on - strand, within DvMF_2330at 2938.284 kb on - strand, within DvMF_2330at 2938.379 kb on - strand, within DvMF_2330at 2938.607 kb on + strandat 2938.651 kb on - strandat 2938.657 kb on - strandat 2938.783 kb on + strandat 2938.896 kb on + strandat 2938.904 kb on - strandat 2938.985 kb on - strand, within DvMF_2331at 2939.249 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml
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2,936,728 + DvMF_2329 0.17 -1.3
2,936,728 + DvMF_2329 0.17 -1.3
2,936,754 + DvMF_2329 0.20 +0.2
2,936,899 - DvMF_2329 0.34 +0.6
2,937,056 + DvMF_2329 0.49 -2.5
2,937,061 + DvMF_2329 0.49 -1.5
2,937,323 + DvMF_2329 0.75 -2.4
2,937,429 - DvMF_2329 0.85 -0.8
2,937,772 + DvMF_2330 0.13 -0.5
2,938,047 - DvMF_2330 0.42 +0.8
2,938,284 - DvMF_2330 0.67 -0.3
2,938,379 - DvMF_2330 0.78 -0.6
2,938,607 + -0.0
2,938,651 - -1.7
2,938,657 - -3.5
2,938,783 + -1.9
2,938,896 + -0.9
2,938,904 - -0.9
2,938,985 - DvMF_2331 0.27 +0.4
2,939,249 + -0.5

Or see this region's nucleotide sequence