Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2324 and DvMF_2325 are separated by 121 nucleotides DvMF_2325 and DvMF_2326 are separated by 288 nucleotides
DvMF_2324: DvMF_2324 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 2,926,030 to 2,929,518
_2324
DvMF_2325: DvMF_2325 - ectoine/hydroxyectoine ABC transporter solute-binding protein (RefSeq), at 2,929,640 to 2,930,539
_2325
DvMF_2326: DvMF_2326 - TPR repeat-containing protein (RefSeq), at 2,930,828 to 2,931,592
_2326
Position (kb)
2929
2930
2931 Strain fitness (log2 ratio)
-2
-1
0
1 at 2928.800 kb on - strand, within DvMF_2324 at 2928.895 kb on - strand, within DvMF_2324 at 2928.946 kb on + strand, within DvMF_2324 at 2928.946 kb on + strand, within DvMF_2324 at 2928.954 kb on - strand, within DvMF_2324 at 2929.222 kb on + strand at 2929.230 kb on - strand at 2929.429 kb on + strand at 2929.445 kb on + strand at 2929.527 kb on - strand at 2929.645 kb on + strand at 2929.705 kb on + strand at 2929.916 kb on + strand, within DvMF_2325 at 2929.939 kb on + strand, within DvMF_2325 at 2929.947 kb on - strand, within DvMF_2325 at 2930.009 kb on - strand, within DvMF_2325 at 2930.068 kb on + strand, within DvMF_2325 at 2930.076 kb on - strand, within DvMF_2325 at 2930.284 kb on - strand, within DvMF_2325 at 2930.489 kb on - strand at 2930.612 kb on - strand at 2930.705 kb on + strand at 2930.713 kb on - strand at 2931.200 kb on + strand, within DvMF_2326 at 2931.503 kb on + strand, within DvMF_2326
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 2,928,800 - DvMF_2324 0.79 +0.6 2,928,895 - DvMF_2324 0.82 -1.4 2,928,946 + DvMF_2324 0.84 -1.8 2,928,946 + DvMF_2324 0.84 -0.3 2,928,954 - DvMF_2324 0.84 -0.6 2,929,222 + -0.9 2,929,230 - -0.8 2,929,429 + -0.9 2,929,445 + -1.1 2,929,527 - -0.6 2,929,645 + +0.8 2,929,705 + +0.5 2,929,916 + DvMF_2325 0.31 +0.3 2,929,939 + DvMF_2325 0.33 -0.2 2,929,947 - DvMF_2325 0.34 +1.4 2,930,009 - DvMF_2325 0.41 -0.4 2,930,068 + DvMF_2325 0.48 -0.4 2,930,076 - DvMF_2325 0.48 -0.5 2,930,284 - DvMF_2325 0.72 -0.9 2,930,489 - -0.9 2,930,612 - +0.0 2,930,705 + -0.8 2,930,713 - -1.1 2,931,200 + DvMF_2326 0.49 -0.7 2,931,503 + DvMF_2326 0.88 -1.4
Or see this region's nucleotide sequence