Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2154

Experiment: MoYLS4 with Rifampicin 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2153 and DvMF_2154 are separated by 365 nucleotidesDvMF_2154 and DvMF_2155 are separated by 227 nucleotides DvMF_2153: DvMF_2153 - PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 2,682,313 to 2,684,127 _2153 DvMF_2154: DvMF_2154 - alanine dehydrogenase (RefSeq), at 2,684,493 to 2,685,608 _2154 DvMF_2155: DvMF_2155 - ABC-2 type transporter (RefSeq), at 2,685,836 to 2,687,143 _2155 Position (kb) 2684 2685 2686Strain fitness (log2 ratio) -3 -2 -1 0 1at 2683.674 kb on - strand, within DvMF_2153at 2683.701 kb on + strand, within DvMF_2153at 2683.718 kb on + strand, within DvMF_2153at 2683.875 kb on + strand, within DvMF_2153at 2684.719 kb on - strand, within DvMF_2154at 2684.986 kb on + strand, within DvMF_2154at 2685.108 kb on - strand, within DvMF_2154at 2685.372 kb on + strand, within DvMF_2154at 2685.372 kb on + strand, within DvMF_2154at 2685.415 kb on + strand, within DvMF_2154at 2685.434 kb on - strand, within DvMF_2154at 2685.710 kb on - strandat 2685.994 kb on + strand, within DvMF_2155at 2686.151 kb on - strand, within DvMF_2155at 2686.159 kb on + strand, within DvMF_2155at 2686.179 kb on - strand, within DvMF_2155at 2686.446 kb on - strand, within DvMF_2155at 2686.468 kb on + strand, within DvMF_2155at 2686.589 kb on + strand, within DvMF_2155

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml
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2,683,674 - DvMF_2153 0.75 -0.1
2,683,701 + DvMF_2153 0.76 -1.4
2,683,718 + DvMF_2153 0.77 -0.8
2,683,875 + DvMF_2153 0.86 -1.4
2,684,719 - DvMF_2154 0.20 -0.6
2,684,986 + DvMF_2154 0.44 -0.7
2,685,108 - DvMF_2154 0.55 -3.3
2,685,372 + DvMF_2154 0.79 -1.2
2,685,372 + DvMF_2154 0.79 -0.9
2,685,415 + DvMF_2154 0.83 -0.7
2,685,434 - DvMF_2154 0.84 -1.1
2,685,710 - -0.9
2,685,994 + DvMF_2155 0.12 -2.5
2,686,151 - DvMF_2155 0.24 -0.2
2,686,159 + DvMF_2155 0.25 -1.4
2,686,179 - DvMF_2155 0.26 -2.0
2,686,446 - DvMF_2155 0.47 -0.5
2,686,468 + DvMF_2155 0.48 -1.2
2,686,589 + DvMF_2155 0.58 -0.3

Or see this region's nucleotide sequence