Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2073

Experiment: MoYLS4 with Rifampicin 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2072 and DvMF_2073 are separated by 219 nucleotidesDvMF_2073 and DvMF_2074 are separated by 168 nucleotides DvMF_2072: DvMF_2072 - hypothetical protein (RefSeq), at 2,572,308 to 2,573,084 _2072 DvMF_2073: DvMF_2073 - hypothetical protein (RefSeq), at 2,573,304 to 2,574,506 _2073 DvMF_2074: DvMF_2074 - glycosyl transferase family 2 (RefSeq), at 2,574,675 to 2,575,799 _2074 Position (kb) 2573 2574 2575Strain fitness (log2 ratio) -2 -1 0 1at 2572.339 kb on + strandat 2572.429 kb on + strand, within DvMF_2072at 2572.442 kb on - strand, within DvMF_2072at 2572.670 kb on + strand, within DvMF_2072at 2572.803 kb on + strand, within DvMF_2072at 2573.128 kb on + strandat 2573.136 kb on - strandat 2573.192 kb on + strandat 2573.213 kb on - strandat 2573.255 kb on - strandat 2573.291 kb on + strandat 2573.448 kb on + strand, within DvMF_2073at 2573.529 kb on + strand, within DvMF_2073at 2573.791 kb on - strand, within DvMF_2073at 2573.822 kb on + strand, within DvMF_2073at 2574.043 kb on - strand, within DvMF_2073at 2574.043 kb on - strand, within DvMF_2073at 2574.103 kb on - strand, within DvMF_2073at 2574.313 kb on - strand, within DvMF_2073at 2574.575 kb on - strandat 2574.703 kb on - strandat 2574.763 kb on - strandat 2574.779 kb on + strandat 2574.943 kb on - strand, within DvMF_2074at 2574.962 kb on - strand, within DvMF_2074at 2574.990 kb on + strand, within DvMF_2074at 2574.997 kb on + strand, within DvMF_2074at 2575.005 kb on - strand, within DvMF_2074at 2575.066 kb on + strand, within DvMF_2074at 2575.080 kb on + strand, within DvMF_2074at 2575.088 kb on - strand, within DvMF_2074at 2575.113 kb on - strand, within DvMF_2074at 2575.128 kb on - strand, within DvMF_2074at 2575.128 kb on - strand, within DvMF_2074at 2575.213 kb on + strand, within DvMF_2074at 2575.389 kb on - strand, within DvMF_2074

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml
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2,572,339 + -1.0
2,572,429 + DvMF_2072 0.16 -1.5
2,572,442 - DvMF_2072 0.17 +0.1
2,572,670 + DvMF_2072 0.47 -0.6
2,572,803 + DvMF_2072 0.64 -0.2
2,573,128 + +0.3
2,573,136 - -2.5
2,573,192 + -0.6
2,573,213 - -0.7
2,573,255 - -0.5
2,573,291 + -1.0
2,573,448 + DvMF_2073 0.12 -0.2
2,573,529 + DvMF_2073 0.19 -0.9
2,573,791 - DvMF_2073 0.40 -0.4
2,573,822 + DvMF_2073 0.43 +0.2
2,574,043 - DvMF_2073 0.61 -1.4
2,574,043 - DvMF_2073 0.61 +0.0
2,574,103 - DvMF_2073 0.66 +0.3
2,574,313 - DvMF_2073 0.84 -0.4
2,574,575 - -1.1
2,574,703 - -0.5
2,574,763 - -1.4
2,574,779 + -0.5
2,574,943 - DvMF_2074 0.24 -1.1
2,574,962 - DvMF_2074 0.26 -0.8
2,574,990 + DvMF_2074 0.28 +0.2
2,574,997 + DvMF_2074 0.29 -1.5
2,575,005 - DvMF_2074 0.29 -0.1
2,575,066 + DvMF_2074 0.35 -1.0
2,575,080 + DvMF_2074 0.36 -1.6
2,575,088 - DvMF_2074 0.37 -0.3
2,575,113 - DvMF_2074 0.39 -0.3
2,575,128 - DvMF_2074 0.40 -0.7
2,575,128 - DvMF_2074 0.40 -1.5
2,575,213 + DvMF_2074 0.48 -0.1
2,575,389 - DvMF_2074 0.63 +0.2

Or see this region's nucleotide sequence