Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1974 and DvMF_1975 are separated by 10 nucleotides DvMF_1975 and DvMF_1976 overlap by 1 nucleotides DvMF_1976 and DvMF_1977 are separated by 2 nucleotides DvMF_1977 and 11504568 are separated by 186 nucleotides 11504568 and 11646931 overlap by 32 nucleotides 11646931 and 11789323 overlap by 32 nucleotides 11789323 and 11504569 are separated by 0 nucleotides 11504569 and 11646932 overlap by 35 nucleotides 11646932 and 11789324 overlap by 35 nucleotides 11789324 and 11504570 are separated by 0 nucleotides 11504570 and 11646933 overlap by 32 nucleotides 11646933 and 11789325 overlap by 32 nucleotides 11789325 and 11504571 are separated by 0 nucleotides 11504571 and 11646934 overlap by 34 nucleotides 11646934 and 11789326 overlap by 34 nucleotides 11789326 and 11504572 are separated by 0 nucleotides 11504572 and 11646935 overlap by 32 nucleotides 11646935 and 11789327 overlap by 32 nucleotides 11789327 and 11504573 are separated by 0 nucleotides 11504573 and 11646936 overlap by 33 nucleotides 11646936 and 11789328 overlap by 33 nucleotides 11789328 and 11504574 are separated by 0 nucleotides 11504574 and 11646937 overlap by 32 nucleotides 11646937 and 11789329 overlap by 32 nucleotides 11789329 and 11504575 are separated by 0 nucleotides 11504575 and 11646938 overlap by 35 nucleotides 11646938 and 11789330 overlap by 35 nucleotides 11789330 and 11504576 are separated by 0 nucleotides 11504576 and 11646939 overlap by 32 nucleotides 11646939 and 11789331 overlap by 32 nucleotides 11789331 and 11504577 are separated by 0 nucleotides 11504577 and 11646940 overlap by 35 nucleotides 11646940 and 11789332 overlap by 35 nucleotides 11789332 and 11504578 are separated by 0 nucleotides 11504578 and 11646941 overlap by 32 nucleotides 11646941 and 11789333 overlap by 32 nucleotides 11789333 and 11504579 are separated by 0 nucleotides 11504579 and 11646942 overlap by 35 nucleotides 11646942 and 11789334 overlap by 35 nucleotides 11789334 and 11504580 are separated by 0 nucleotides 11504580 and 11646943 overlap by 32 nucleotides 11646943 and 11789335 overlap by 32 nucleotides 11789335 and 11504581 are separated by 0 nucleotides 11504581 and 11646944 overlap by 33 nucleotides 11646944 and 11789336 overlap by 33 nucleotides 11789336 and 11504582 are separated by 0 nucleotides 11504582 and 11646945 overlap by 32 nucleotides 11646945 and 11789337 overlap by 32 nucleotides 11789337 and 11504583 are separated by 0 nucleotides
DvMF_1974: DvMF_1974 - CRISPR-associated protein, Csd2 family (RefSeq), at 2,441,451 to 2,442,404
_1974
DvMF_1975: DvMF_1975 - CRISPR-associated protein Cas4 (RefSeq), at 2,442,415 to 2,443,182
_1975
DvMF_1976: DvMF_1976 - CRISPR-associated protein Cas1 (RefSeq), at 2,443,182 to 2,444,213
_1976
DvMF_1977: DvMF_1977 - CRISPR-associated protein Cas2 (RefSeq), at 2,444,216 to 2,444,506
_1977
11504568 - no description, at 2,444,693 to 2,444,724
11504568
11646931 - no description, at 2,444,693 to 2,444,724
11646931
11789323 - no description, at 2,444,693 to 2,444,724
11789323
11504569 - no description, at 2,444,725 to 2,444,759
11504569
11646932 - no description, at 2,444,725 to 2,444,759
11646932
11789324 - no description, at 2,444,725 to 2,444,759
11789324
11504570 - no description, at 2,444,760 to 2,444,791
11504570
11646933 - no description, at 2,444,760 to 2,444,791
11646933
11789325 - no description, at 2,444,760 to 2,444,791
11789325
11504571 - no description, at 2,444,792 to 2,444,825
11504571
11646934 - no description, at 2,444,792 to 2,444,825
11646934
11789326 - no description, at 2,444,792 to 2,444,825
11789326
11504572 - no description, at 2,444,826 to 2,444,857
11504572
11646935 - no description, at 2,444,826 to 2,444,857
11646935
11789327 - no description, at 2,444,826 to 2,444,857
11789327
11504573 - no description, at 2,444,858 to 2,444,890
11504573
11646936 - no description, at 2,444,858 to 2,444,890
11646936
11789328 - no description, at 2,444,858 to 2,444,890
11789328
11504574 - no description, at 2,444,891 to 2,444,922
11504574
11646937 - no description, at 2,444,891 to 2,444,922
11646937
11789329 - no description, at 2,444,891 to 2,444,922
11789329
11504575 - no description, at 2,444,923 to 2,444,957
11504575
11646938 - no description, at 2,444,923 to 2,444,957
11646938
11789330 - no description, at 2,444,923 to 2,444,957
11789330
11504576 - no description, at 2,444,958 to 2,444,989
11504576
11646939 - no description, at 2,444,958 to 2,444,989
11646939
11789331 - no description, at 2,444,958 to 2,444,989
11789331
11504577 - no description, at 2,444,990 to 2,445,024
11504577
11646940 - no description, at 2,444,990 to 2,445,024
11646940
11789332 - no description, at 2,444,990 to 2,445,024
11789332
11504578 - no description, at 2,445,025 to 2,445,056
11504578
11646941 - no description, at 2,445,025 to 2,445,056
11646941
11789333 - no description, at 2,445,025 to 2,445,056
11789333
11504579 - no description, at 2,445,057 to 2,445,091
11504579
11646942 - no description, at 2,445,057 to 2,445,091
11646942
11789334 - no description, at 2,445,057 to 2,445,091
11789334
11504580 - no description, at 2,445,092 to 2,445,123
11504580
11646943 - no description, at 2,445,092 to 2,445,123
11646943
11789335 - no description, at 2,445,092 to 2,445,123
11789335
11504581 - no description, at 2,445,124 to 2,445,156
11504581
11646944 - no description, at 2,445,124 to 2,445,156
11646944
11789336 - no description, at 2,445,124 to 2,445,156
11789336
11504582 - no description, at 2,445,157 to 2,445,188
11504582
11646945 - no description, at 2,445,157 to 2,445,188
11646945
11789337 - no description, at 2,445,157 to 2,445,188
11789337
11504583 - no description, at 2,445,189 to 2,445,221
11504583
11646946 - no description, at 2,445,189 to 2,445,221
11646946
11789338 - no description, at 2,445,189 to 2,445,221
11789338
Position (kb)
2443
2444
2445 Strain fitness (log2 ratio)
-1
0
1 at 2442.579 kb on + strand, within DvMF_1975 at 2442.579 kb on + strand, within DvMF_1975 at 2442.579 kb on + strand, within DvMF_1975 at 2442.587 kb on - strand, within DvMF_1975 at 2442.798 kb on + strand, within DvMF_1975 at 2442.827 kb on + strand, within DvMF_1975 at 2443.300 kb on + strand, within DvMF_1976 at 2443.300 kb on + strand, within DvMF_1976 at 2443.308 kb on - strand, within DvMF_1976 at 2443.426 kb on + strand, within DvMF_1976 at 2443.553 kb on - strand, within DvMF_1976 at 2443.781 kb on - strand, within DvMF_1976 at 2443.978 kb on + strand, within DvMF_1976 at 2443.988 kb on - strand, within DvMF_1976 at 2444.099 kb on - strand, within DvMF_1976 at 2444.101 kb on - strand, within DvMF_1976 at 2444.299 kb on + strand, within DvMF_1977 at 2444.307 kb on - strand, within DvMF_1977 at 2444.358 kb on + strand, within DvMF_1977 at 2444.457 kb on - strand, within DvMF_1977 at 2444.864 kb on - strand at 2444.874 kb on - strand at 2445.009 kb on + strand at 2445.017 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 2,442,579 + DvMF_1975 0.21 -0.4 2,442,579 + DvMF_1975 0.21 -0.3 2,442,579 + DvMF_1975 0.21 -0.2 2,442,587 - DvMF_1975 0.22 -0.8 2,442,798 + DvMF_1975 0.50 -1.6 2,442,827 + DvMF_1975 0.54 -0.8 2,443,300 + DvMF_1976 0.11 -0.6 2,443,300 + DvMF_1976 0.11 -1.2 2,443,308 - DvMF_1976 0.12 +0.1 2,443,426 + DvMF_1976 0.24 -0.7 2,443,553 - DvMF_1976 0.36 -1.0 2,443,781 - DvMF_1976 0.58 +0.6 2,443,978 + DvMF_1976 0.77 -0.3 2,443,988 - DvMF_1976 0.78 -0.2 2,444,099 - DvMF_1976 0.89 -0.2 2,444,101 - DvMF_1976 0.89 +1.0 2,444,299 + DvMF_1977 0.29 +0.2 2,444,307 - DvMF_1977 0.31 -1.0 2,444,358 + DvMF_1977 0.49 -0.8 2,444,457 - DvMF_1977 0.83 -1.2 2,444,864 - +1.4 2,444,874 - -0.6 2,445,009 + -0.6 2,445,017 - +0.7
Or see this region's nucleotide sequence