Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1918 and DvMF_1919 are separated by 139 nucleotides DvMF_1919 and DvMF_1920 are separated by 12 nucleotides DvMF_1920 and DvMF_1921 are separated by 211 nucleotides
DvMF_1918: DvMF_1918 - extracellular solute-binding protein family 3 (RefSeq), at 2,364,579 to 2,365,325
_1918
DvMF_1919: DvMF_1919 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 2,365,465 to 2,366,136
_1919
DvMF_1920: DvMF_1920 - ABC transporter related (RefSeq), at 2,366,149 to 2,366,898
_1920
DvMF_1921: DvMF_1921 - A/G-specific adenine glycosylase (RefSeq), at 2,367,110 to 2,368,414
_1921
Position (kb)
2365
2366
2367 Strain fitness (log2 ratio)
-2
-1
0
1 at 2364.854 kb on + strand, within DvMF_1918 at 2365.019 kb on + strand, within DvMF_1918 at 2365.333 kb on - strand at 2365.476 kb on - strand at 2365.596 kb on + strand, within DvMF_1919 at 2365.604 kb on - strand, within DvMF_1919 at 2366.112 kb on + strand at 2366.225 kb on + strand, within DvMF_1920 at 2366.225 kb on + strand, within DvMF_1920 at 2366.233 kb on - strand, within DvMF_1920 at 2366.459 kb on + strand, within DvMF_1920 at 2366.872 kb on + strand at 2366.910 kb on - strand at 2367.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 2,364,854 + DvMF_1918 0.37 -0.6 2,365,019 + DvMF_1918 0.59 -0.8 2,365,333 - -1.6 2,365,476 - -1.0 2,365,596 + DvMF_1919 0.19 -2.5 2,365,604 - DvMF_1919 0.21 -0.9 2,366,112 + +0.1 2,366,225 + DvMF_1920 0.10 -1.1 2,366,225 + DvMF_1920 0.10 -1.3 2,366,233 - DvMF_1920 0.11 -0.9 2,366,459 + DvMF_1920 0.41 +0.3 2,366,872 + -1.4 2,366,910 - -0.6 2,367,046 - -1.4
Or see this region's nucleotide sequence