Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1771 and DvMF_1772 are separated by 86 nucleotides DvMF_1772 and DvMF_1773 are separated by 99 nucleotides DvMF_1773 and DvMF_1774 are separated by 112 nucleotides
DvMF_1771: DvMF_1771 - hypothetical protein (RefSeq), at 2,167,524 to 2,167,814
_1771
DvMF_1772: DvMF_1772 - response regulator receiver protein (RefSeq), at 2,167,901 to 2,168,356
_1772
DvMF_1773: DvMF_1773 - response regulator receiver sensor signal transduction histidine kinase (RefSeq), at 2,168,456 to 2,169,682
_1773
DvMF_1774: DvMF_1774 - hypothetical protein (RefSeq), at 2,169,795 to 2,170,553
_1774
Position (kb)
2168
2169
2170 Strain fitness (log2 ratio)
-1
0
1 at 2167.900 kb on + strand at 2168.096 kb on + strand, within DvMF_1772 at 2168.237 kb on - strand, within DvMF_1772 at 2168.303 kb on - strand, within DvMF_1772 at 2169.026 kb on + strand, within DvMF_1773 at 2169.080 kb on + strand, within DvMF_1773 at 2169.140 kb on - strand, within DvMF_1773 at 2169.390 kb on + strand, within DvMF_1773 at 2169.390 kb on + strand, within DvMF_1773 at 2169.463 kb on - strand, within DvMF_1773 at 2169.484 kb on - strand, within DvMF_1773 at 2169.484 kb on - strand, within DvMF_1773 at 2169.539 kb on + strand, within DvMF_1773 at 2169.542 kb on - strand, within DvMF_1773 at 2169.552 kb on - strand, within DvMF_1773 at 2169.676 kb on + strand at 2169.694 kb on + strand at 2169.920 kb on + strand, within DvMF_1774 at 2170.047 kb on + strand, within DvMF_1774 at 2170.618 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 2,167,900 + -1.0 2,168,096 + DvMF_1772 0.43 -0.5 2,168,237 - DvMF_1772 0.74 -1.4 2,168,303 - DvMF_1772 0.88 -1.1 2,169,026 + DvMF_1773 0.46 -0.3 2,169,080 + DvMF_1773 0.51 -0.6 2,169,140 - DvMF_1773 0.56 +0.3 2,169,390 + DvMF_1773 0.76 -0.6 2,169,390 + DvMF_1773 0.76 -0.3 2,169,463 - DvMF_1773 0.82 -1.1 2,169,484 - DvMF_1773 0.84 +0.4 2,169,484 - DvMF_1773 0.84 -0.2 2,169,539 + DvMF_1773 0.88 -0.2 2,169,542 - DvMF_1773 0.89 -0.3 2,169,552 - DvMF_1773 0.89 +1.7 2,169,676 + -0.1 2,169,694 + -0.7 2,169,920 + DvMF_1774 0.16 -0.8 2,170,047 + DvMF_1774 0.33 -0.4 2,170,618 - -1.0
Or see this region's nucleotide sequence