Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1666 and DvMF_1667 are separated by 317 nucleotides DvMF_1667 and DvMF_1668 are separated by 121 nucleotides DvMF_1668 and DvMF_1669 are separated by 10 nucleotides DvMF_1669 and DvMF_1670 are separated by 8 nucleotides DvMF_1670 and DvMF_1671 are separated by 170 nucleotides
DvMF_1666: DvMF_1666 - acyltransferase 3 (RefSeq), at 2,039,862 to 2,040,881
_1666
DvMF_1667: DvMF_1667 - hypothetical protein (RefSeq), at 2,041,199 to 2,041,420
_1667
DvMF_1668: DvMF_1668 - plasmid maintenance system killer (RefSeq), at 2,041,542 to 2,041,820
_1668
DvMF_1669: DvMF_1669 - plasmid maintenance system antidote protein, XRE family (RefSeq), at 2,041,831 to 2,042,136
_1669
DvMF_1670: DvMF_1670 - hypothetical protein (RefSeq), at 2,042,145 to 2,042,438
_1670
DvMF_1671: DvMF_1671 - hypothetical protein (RefSeq), at 2,042,609 to 2,043,241
_1671
Position (kb)
2041
2042 Strain fitness (log2 ratio)
-1
0
1 at 2041.187 kb on + strand at 2041.193 kb on - strand at 2041.277 kb on - strand, within DvMF_1667 at 2041.397 kb on - strand, within DvMF_1667 at 2041.580 kb on + strand, within DvMF_1668 at 2041.706 kb on + strand, within DvMF_1668 at 2042.116 kb on - strand at 2042.117 kb on + strand at 2042.233 kb on + strand, within DvMF_1670 at 2042.309 kb on - strand, within DvMF_1670 at 2042.525 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 2,041,187 + +0.1 2,041,193 - -0.6 2,041,277 - DvMF_1667 0.35 +0.4 2,041,397 - DvMF_1667 0.89 -1.7 2,041,580 + DvMF_1668 0.14 -1.7 2,041,706 + DvMF_1668 0.59 -0.7 2,042,116 - -0.3 2,042,117 + -0.9 2,042,233 + DvMF_1670 0.30 +1.2 2,042,309 - DvMF_1670 0.56 -0.6 2,042,525 - -0.8
Or see this region's nucleotide sequence