Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1630

Experiment: MoYLS4 with Rifampicin 0.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1629 and DvMF_1630 are separated by 42 nucleotidesDvMF_1630 and DvMF_1631 are separated by 349 nucleotides DvMF_1629: DvMF_1629 - ABC transporter related (RefSeq), at 2,008,369 to 2,009,316 _1629 DvMF_1630: DvMF_1630 - protein of unknown function DUF214 (RefSeq), at 2,009,359 to 2,010,507 _1630 DvMF_1631: DvMF_1631 - two component transcriptional regulator, winged helix family (RefSeq), at 2,010,857 to 2,011,684 _1631 Position (kb) 2009 2010 2011Strain fitness (log2 ratio) -3 -2 -1 0 1at 2008.428 kb on + strandat 2008.710 kb on + strand, within DvMF_1629at 2008.723 kb on + strand, within DvMF_1629at 2008.839 kb on + strand, within DvMF_1629at 2009.029 kb on - strand, within DvMF_1629at 2009.063 kb on - strand, within DvMF_1629at 2009.162 kb on - strand, within DvMF_1629at 2009.278 kb on - strandat 2009.318 kb on + strandat 2009.326 kb on - strandat 2009.331 kb on - strandat 2009.363 kb on + strandat 2009.434 kb on + strandat 2009.465 kb on - strandat 2009.585 kb on - strand, within DvMF_1630at 2009.622 kb on - strand, within DvMF_1630at 2009.863 kb on - strand, within DvMF_1630at 2009.865 kb on + strand, within DvMF_1630at 2009.921 kb on + strand, within DvMF_1630at 2010.724 kb on + strandat 2010.864 kb on + strandat 2010.872 kb on - strandat 2010.872 kb on - strandat 2010.874 kb on + strandat 2010.921 kb on - strandat 2011.028 kb on - strand, within DvMF_1631at 2011.028 kb on - strand, within DvMF_1631at 2011.044 kb on + strand, within DvMF_1631at 2011.208 kb on + strand, within DvMF_1631at 2011.216 kb on - strand, within DvMF_1631at 2011.433 kb on + strand, within DvMF_1631at 2011.473 kb on - strand, within DvMF_1631

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml
remove
2,008,428 + -0.0
2,008,710 + DvMF_1629 0.36 -0.7
2,008,723 + DvMF_1629 0.37 -1.5
2,008,839 + DvMF_1629 0.50 -0.5
2,009,029 - DvMF_1629 0.70 -1.2
2,009,063 - DvMF_1629 0.73 -0.1
2,009,162 - DvMF_1629 0.84 -0.7
2,009,278 - -0.7
2,009,318 + -0.0
2,009,326 - -2.9
2,009,331 - -0.2
2,009,363 + -1.6
2,009,434 + -0.5
2,009,465 - +1.3
2,009,585 - DvMF_1630 0.20 -0.4
2,009,622 - DvMF_1630 0.23 -2.4
2,009,863 - DvMF_1630 0.44 -3.3
2,009,865 + DvMF_1630 0.44 -0.5
2,009,921 + DvMF_1630 0.49 +0.5
2,010,724 + -1.1
2,010,864 + -3.6
2,010,872 - -1.5
2,010,872 - -0.8
2,010,874 + +0.3
2,010,921 - +0.6
2,011,028 - DvMF_1631 0.21 -0.4
2,011,028 - DvMF_1631 0.21 +0.1
2,011,044 + DvMF_1631 0.23 -1.7
2,011,208 + DvMF_1631 0.42 +1.6
2,011,216 - DvMF_1631 0.43 -0.5
2,011,433 + DvMF_1631 0.70 +0.1
2,011,473 - DvMF_1631 0.74 -0.9

Or see this region's nucleotide sequence