Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1507 and DvMF_1508 are separated by 158 nucleotides DvMF_1508 and DvMF_1509 are separated by 95 nucleotides DvMF_1509 and DvMF_1510 are separated by 384 nucleotides
DvMF_1507: DvMF_1507 - Extradiol ring-cleavage dioxygenase class III protein subunit B (RefSeq), at 1,859,336 to 1,860,139
_1507
DvMF_1508: DvMF_1508 - hypothetical protein (RefSeq), at 1,860,298 to 1,860,729
_1508
DvMF_1509: DvMF_1509 - hypothetical protein (RefSeq), at 1,860,825 to 1,861,259
_1509
DvMF_1510: DvMF_1510 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,861,644 to 1,863,056
_1510
Position (kb)
1860
1861
1862 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1859.892 kb on + strand, within DvMF_1507 at 1859.951 kb on + strand, within DvMF_1507 at 1859.971 kb on + strand, within DvMF_1507 at 1860.040 kb on + strand, within DvMF_1507 at 1860.399 kb on + strand, within DvMF_1508 at 1860.541 kb on + strand, within DvMF_1508 at 1860.744 kb on - strand at 1860.755 kb on + strand at 1860.755 kb on + strand at 1860.763 kb on - strand at 1860.764 kb on - strand at 1860.822 kb on + strand at 1860.962 kb on + strand, within DvMF_1509 at 1861.099 kb on - strand, within DvMF_1509 at 1861.593 kb on - strand at 1861.643 kb on - strand at 1861.735 kb on - strand at 1861.935 kb on - strand, within DvMF_1510 at 1862.142 kb on - strand, within DvMF_1510 at 1862.223 kb on + strand, within DvMF_1510 at 1862.238 kb on - strand, within DvMF_1510 at 1862.259 kb on + strand, within DvMF_1510
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 1,859,892 + DvMF_1507 0.69 -0.9 1,859,951 + DvMF_1507 0.76 -0.4 1,859,971 + DvMF_1507 0.79 -2.2 1,860,040 + DvMF_1507 0.88 -1.2 1,860,399 + DvMF_1508 0.23 -0.3 1,860,541 + DvMF_1508 0.56 -0.9 1,860,744 - -0.9 1,860,755 + -1.5 1,860,755 + -2.9 1,860,763 - -2.7 1,860,764 - -0.3 1,860,822 + -0.2 1,860,962 + DvMF_1509 0.31 -1.4 1,861,099 - DvMF_1509 0.63 -1.3 1,861,593 - -0.7 1,861,643 - -1.2 1,861,735 - -0.7 1,861,935 - DvMF_1510 0.21 -0.7 1,862,142 - DvMF_1510 0.35 -0.2 1,862,223 + DvMF_1510 0.41 -0.0 1,862,238 - DvMF_1510 0.42 -2.5 1,862,259 + DvMF_1510 0.44 -1.2
Or see this region's nucleotide sequence