Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1230 and DvMF_1231 are separated by 125 nucleotides DvMF_1231 and DvMF_1232 overlap by 4 nucleotides DvMF_1232 and DvMF_1233 overlap by 1 nucleotides
DvMF_1230: DvMF_1230 - molybdenum cofactor biosynthesis protein A (RefSeq), at 1,518,320 to 1,519,405
_1230
DvMF_1231: DvMF_1231 - Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein (RefSeq), at 1,519,531 to 1,520,403
_1231
DvMF_1232: DvMF_1232 - formate dehydrogenase accessory protein FdhD, putative (RefSeq), at 1,520,400 to 1,521,224
_1232
DvMF_1233: DvMF_1233 - formate dehydrogenase accessory protein (RefSeq), at 1,521,224 to 1,522,135
_1233
Position (kb)
1519
1520
1521 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1518.783 kb on - strand, within DvMF_1230 at 1519.037 kb on + strand, within DvMF_1230 at 1519.039 kb on + strand, within DvMF_1230 at 1519.039 kb on + strand, within DvMF_1230 at 1519.039 kb on + strand, within DvMF_1230 at 1519.039 kb on + strand, within DvMF_1230 at 1519.039 kb on + strand, within DvMF_1230 at 1519.039 kb on + strand, within DvMF_1230 at 1519.039 kb on + strand, within DvMF_1230 at 1519.047 kb on - strand, within DvMF_1230 at 1519.047 kb on - strand, within DvMF_1230 at 1519.244 kb on + strand, within DvMF_1230 at 1519.284 kb on - strand, within DvMF_1230 at 1519.302 kb on - strand at 1519.855 kb on + strand, within DvMF_1231 at 1519.999 kb on + strand, within DvMF_1231 at 1520.331 kb on - strand at 1520.494 kb on - strand, within DvMF_1232 at 1520.689 kb on - strand, within DvMF_1232 at 1520.762 kb on - strand, within DvMF_1232 at 1520.969 kb on + strand, within DvMF_1232 at 1521.041 kb on - strand, within DvMF_1232 at 1521.238 kb on - strand at 1521.356 kb on + strand, within DvMF_1233
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 1,518,783 - DvMF_1230 0.43 +0.9 1,519,037 + DvMF_1230 0.66 -0.5 1,519,039 + DvMF_1230 0.66 -0.9 1,519,039 + DvMF_1230 0.66 -2.9 1,519,039 + DvMF_1230 0.66 +0.8 1,519,039 + DvMF_1230 0.66 +0.5 1,519,039 + DvMF_1230 0.66 +0.1 1,519,039 + DvMF_1230 0.66 +0.8 1,519,039 + DvMF_1230 0.66 -0.3 1,519,047 - DvMF_1230 0.67 +2.2 1,519,047 - DvMF_1230 0.67 -1.0 1,519,244 + DvMF_1230 0.85 +0.1 1,519,284 - DvMF_1230 0.89 +0.7 1,519,302 - +0.7 1,519,855 + DvMF_1231 0.37 +0.9 1,519,999 + DvMF_1231 0.54 +1.5 1,520,331 - -1.5 1,520,494 - DvMF_1232 0.11 -1.6 1,520,689 - DvMF_1232 0.35 -0.8 1,520,762 - DvMF_1232 0.44 -1.5 1,520,969 + DvMF_1232 0.69 -3.4 1,521,041 - DvMF_1232 0.78 -0.1 1,521,238 - +0.9 1,521,356 + DvMF_1233 0.14 -0.2
Or see this region's nucleotide sequence