Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1193 and DvMF_1194 are separated by 272 nucleotides DvMF_1194 and DvMF_1195 are separated by 100 nucleotides DvMF_1195 and DvMF_1196 are separated by 952 nucleotides
DvMF_1193: DvMF_1193 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,471,305 to 1,472,309
_1193
DvMF_1194: DvMF_1194 - GrpE protein (RefSeq), at 1,472,582 to 1,473,187
_1194
DvMF_1195: DvMF_1195 - heat-inducible transcription repressor HrcA (RefSeq), at 1,473,288 to 1,474,355
_1195
DvMF_1196: DvMF_1196 - sulfur relay protein, TusE/DsrC/DsvC family (RefSeq), at 1,475,308 to 1,475,625
_1196
Position (kb)
1473
1474
1475 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1473.157 kb on - strand at 1473.197 kb on - strand at 1473.492 kb on - strand, within DvMF_1195 at 1473.531 kb on - strand, within DvMF_1195 at 1473.533 kb on + strand, within DvMF_1195 at 1474.095 kb on + strand, within DvMF_1195 at 1474.331 kb on - strand at 1474.340 kb on + strand at 1474.359 kb on + strand at 1474.577 kb on - strand at 1474.623 kb on + strand at 1474.631 kb on - strand at 1474.722 kb on - strand at 1474.722 kb on - strand at 1474.731 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 1,473,157 - +3.1 1,473,197 - -0.5 1,473,492 - DvMF_1195 0.19 -1.0 1,473,531 - DvMF_1195 0.23 -0.9 1,473,533 + DvMF_1195 0.23 -1.7 1,474,095 + DvMF_1195 0.76 -0.5 1,474,331 - -1.2 1,474,340 + -0.3 1,474,359 + -1.8 1,474,577 - +0.1 1,474,623 + -0.1 1,474,631 - -0.9 1,474,722 - -0.7 1,474,722 - -1.1 1,474,731 - -1.5
Or see this region's nucleotide sequence