Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1153 and DvMF_1154 are separated by 168 nucleotides DvMF_1154 and DvMF_1155 are separated by 135 nucleotides
DvMF_1153: DvMF_1153 - Phenylacetate--CoA ligase (RefSeq), at 1,414,629 to 1,415,933
_1153
DvMF_1154: DvMF_1154 - protein of unknown function DUF456 (RefSeq), at 1,416,102 to 1,416,611
_1154
DvMF_1155: DvMF_1155 - RNA methyltransferase, TrmH family, group 1 (RefSeq), at 1,416,747 to 1,417,547
_1155
Position (kb)
1416
1417 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1415.160 kb on - strand, within DvMF_1153 at 1415.264 kb on - strand, within DvMF_1153 at 1415.293 kb on + strand, within DvMF_1153 at 1415.331 kb on - strand, within DvMF_1153 at 1415.358 kb on + strand, within DvMF_1153 at 1415.391 kb on - strand, within DvMF_1153 at 1415.420 kb on - strand, within DvMF_1153 at 1415.484 kb on - strand, within DvMF_1153 at 1415.633 kb on + strand, within DvMF_1153 at 1415.839 kb on + strand at 1415.847 kb on - strand at 1415.910 kb on - strand at 1416.053 kb on + strand at 1416.162 kb on - strand, within DvMF_1154 at 1416.591 kb on + strand at 1416.596 kb on + strand at 1416.604 kb on - strand at 1416.647 kb on + strand at 1416.890 kb on + strand, within DvMF_1155 at 1416.990 kb on - strand, within DvMF_1155 at 1417.042 kb on - strand, within DvMF_1155 at 1417.066 kb on + strand, within DvMF_1155 at 1417.069 kb on - strand, within DvMF_1155 at 1417.210 kb on - strand, within DvMF_1155 at 1417.220 kb on - strand, within DvMF_1155 at 1417.241 kb on - strand, within DvMF_1155 at 1417.259 kb on + strand, within DvMF_1155 at 1417.487 kb on + strand at 1417.490 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 1,415,160 - DvMF_1153 0.41 -0.8 1,415,264 - DvMF_1153 0.49 -1.2 1,415,293 + DvMF_1153 0.51 -2.9 1,415,331 - DvMF_1153 0.54 -1.7 1,415,358 + DvMF_1153 0.56 +0.4 1,415,391 - DvMF_1153 0.58 -1.5 1,415,420 - DvMF_1153 0.61 -1.2 1,415,484 - DvMF_1153 0.66 -0.9 1,415,633 + DvMF_1153 0.77 -0.7 1,415,839 + -0.9 1,415,847 - -1.0 1,415,910 - -1.7 1,416,053 + -1.0 1,416,162 - DvMF_1154 0.12 +0.0 1,416,591 + -0.3 1,416,596 + -0.4 1,416,604 - -3.2 1,416,647 + -0.3 1,416,890 + DvMF_1155 0.18 -1.1 1,416,990 - DvMF_1155 0.30 -2.0 1,417,042 - DvMF_1155 0.37 -1.9 1,417,066 + DvMF_1155 0.40 -1.4 1,417,069 - DvMF_1155 0.40 -0.3 1,417,210 - DvMF_1155 0.58 -0.7 1,417,220 - DvMF_1155 0.59 -0.4 1,417,241 - DvMF_1155 0.62 +0.2 1,417,259 + DvMF_1155 0.64 -0.8 1,417,487 + -0.4 1,417,490 - -0.4
Or see this region's nucleotide sequence