Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1040

Experiment: MoYLS4 with Rifampicin 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1039 and DvMF_1040 are separated by 455 nucleotidesDvMF_1040 and DvMF_1041 are separated by 213 nucleotides DvMF_1039: DvMF_1039 - Type II secretory pathway component ExeA (predicted ATPase)-like protein (RefSeq), at 1,261,238 to 1,263,280 _1039 DvMF_1040: DvMF_1040 - PhoH family protein (RefSeq), at 1,263,736 to 1,265,313 _1040 DvMF_1041: DvMF_1041 - monofunctional biosynthetic peptidoglycan transglycosylase (RefSeq), at 1,265,527 to 1,266,822 _1041 Position (kb) 1263 1264 1265 1266Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1263.123 kb on - strandat 1263.415 kb on - strandat 1263.602 kb on + strandat 1264.221 kb on + strand, within DvMF_1040at 1264.346 kb on + strand, within DvMF_1040at 1264.354 kb on - strand, within DvMF_1040at 1264.354 kb on - strand, within DvMF_1040at 1264.437 kb on + strand, within DvMF_1040at 1264.490 kb on + strand, within DvMF_1040at 1264.586 kb on - strand, within DvMF_1040at 1264.748 kb on - strand, within DvMF_1040at 1264.749 kb on - strand, within DvMF_1040at 1264.756 kb on + strand, within DvMF_1040at 1264.981 kb on - strand, within DvMF_1040at 1265.003 kb on - strand, within DvMF_1040at 1265.052 kb on - strand, within DvMF_1040at 1265.114 kb on + strand, within DvMF_1040at 1265.173 kb on + strandat 1265.181 kb on - strandat 1265.181 kb on - strandat 1265.608 kb on - strandat 1265.633 kb on + strandat 1266.270 kb on + strand, within DvMF_1041at 1266.308 kb on + strand, within DvMF_1041

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml
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1,263,123 - -1.0
1,263,415 - -1.7
1,263,602 + -0.3
1,264,221 + DvMF_1040 0.31 -0.5
1,264,346 + DvMF_1040 0.39 -4.5
1,264,354 - DvMF_1040 0.39 -1.6
1,264,354 - DvMF_1040 0.39 -1.7
1,264,437 + DvMF_1040 0.44 -0.7
1,264,490 + DvMF_1040 0.48 -0.2
1,264,586 - DvMF_1040 0.54 -0.4
1,264,748 - DvMF_1040 0.64 -3.3
1,264,749 - DvMF_1040 0.64 -0.3
1,264,756 + DvMF_1040 0.65 -4.2
1,264,981 - DvMF_1040 0.79 +0.0
1,265,003 - DvMF_1040 0.80 -1.0
1,265,052 - DvMF_1040 0.83 -0.3
1,265,114 + DvMF_1040 0.87 -1.9
1,265,173 + -0.6
1,265,181 - -0.6
1,265,181 - -0.5
1,265,608 - -0.2
1,265,633 + -1.0
1,266,270 + DvMF_1041 0.57 -1.2
1,266,308 + DvMF_1041 0.60 +0.5

Or see this region's nucleotide sequence