Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1000

Experiment: MoYLS4 with Rifampicin 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0999 and DvMF_1000 are separated by 227 nucleotidesDvMF_1000 and DvMF_1001 are separated by 96 nucleotides DvMF_0999: DvMF_0999 - MATE efflux family protein (RefSeq), at 1,213,568 to 1,214,989 _0999 DvMF_1000: DvMF_1000 - biotin/acetyl-CoA-carboxylase ligase (RefSeq), at 1,215,217 to 1,216,215 _1000 DvMF_1001: DvMF_1001 - biotin synthase (RefSeq), at 1,216,312 to 1,217,406 _1001 Position (kb) 1215 1216 1217Strain fitness (log2 ratio) -1 0 1 2at 1214.355 kb on - strand, within DvMF_0999at 1214.398 kb on - strand, within DvMF_0999at 1214.436 kb on - strand, within DvMF_0999at 1214.481 kb on - strand, within DvMF_0999at 1214.638 kb on + strand, within DvMF_0999at 1214.646 kb on - strand, within DvMF_0999at 1215.589 kb on + strand, within DvMF_1000at 1215.897 kb on - strand, within DvMF_1000at 1215.957 kb on + strand, within DvMF_1000at 1215.965 kb on - strand, within DvMF_1000at 1215.965 kb on - strand, within DvMF_1000at 1216.096 kb on - strand, within DvMF_1000at 1216.935 kb on + strand, within DvMF_1001at 1216.943 kb on - strand, within DvMF_1001at 1217.149 kb on + strand, within DvMF_1001

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml
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1,214,355 - DvMF_0999 0.55 -1.0
1,214,398 - DvMF_0999 0.58 -1.1
1,214,436 - DvMF_0999 0.61 -1.1
1,214,481 - DvMF_0999 0.64 +0.1
1,214,638 + DvMF_0999 0.75 -1.5
1,214,646 - DvMF_0999 0.76 -0.5
1,215,589 + DvMF_1000 0.37 +2.3
1,215,897 - DvMF_1000 0.68 +1.1
1,215,957 + DvMF_1000 0.74 +0.3
1,215,965 - DvMF_1000 0.75 +0.2
1,215,965 - DvMF_1000 0.75 +1.8
1,216,096 - DvMF_1000 0.88 -0.1
1,216,935 + DvMF_1001 0.57 -0.9
1,216,943 - DvMF_1001 0.58 +1.4
1,217,149 + DvMF_1001 0.76 -1.2

Or see this region's nucleotide sequence