Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0987

Experiment: MoYLS4 with Rifampicin 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0986 and DvMF_0987 are separated by 266 nucleotidesDvMF_0987 and DvMF_0988 are separated by 554 nucleotides DvMF_0986: DvMF_0986 - 2-hydroxyglutaryl-CoA dehydratase D-component (RefSeq), at 1,197,455 to 1,198,594 _0986 DvMF_0987: DvMF_0987 - CoA-substrate-specific enzyme activase (RefSeq), at 1,198,861 to 1,199,670 _0987 DvMF_0988: DvMF_0988 - hydroxylamine reductase (RefSeq), at 1,200,225 to 1,201,844 _0988 Position (kb) 1198 1199 1200Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1197.880 kb on - strand, within DvMF_0986at 1198.193 kb on + strand, within DvMF_0986at 1198.359 kb on - strand, within DvMF_0986at 1198.493 kb on + strandat 1198.493 kb on + strandat 1198.501 kb on - strandat 1198.501 kb on - strandat 1198.501 kb on - strandat 1198.538 kb on + strandat 1198.604 kb on - strandat 1198.749 kb on - strandat 1198.754 kb on - strandat 1199.199 kb on + strand, within DvMF_0987at 1199.202 kb on - strand, within DvMF_0987at 1199.439 kb on - strand, within DvMF_0987at 1199.610 kb on - strandat 1200.031 kb on - strandat 1200.244 kb on + strandat 1200.435 kb on + strand, within DvMF_0988at 1200.443 kb on - strand, within DvMF_0988at 1200.538 kb on + strand, within DvMF_0988

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml
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1,197,880 - DvMF_0986 0.37 -0.8
1,198,193 + DvMF_0986 0.65 -2.5
1,198,359 - DvMF_0986 0.79 -3.0
1,198,493 + +0.8
1,198,493 + +0.7
1,198,501 - -0.9
1,198,501 - -1.8
1,198,501 - -1.1
1,198,538 + -0.8
1,198,604 - -0.8
1,198,749 - -0.1
1,198,754 - +1.3
1,199,199 + DvMF_0987 0.42 -0.4
1,199,202 - DvMF_0987 0.42 -3.8
1,199,439 - DvMF_0987 0.71 -3.5
1,199,610 - -0.3
1,200,031 - -1.4
1,200,244 + -2.9
1,200,435 + DvMF_0988 0.13 -0.5
1,200,443 - DvMF_0988 0.13 -0.6
1,200,538 + DvMF_0988 0.19 -2.4

Or see this region's nucleotide sequence