Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0950

Experiment: MoYLS4 with Rifampicin 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0949 and DvMF_0950 are separated by 231 nucleotidesDvMF_0950 and DvMF_0951 are separated by 480 nucleotides DvMF_0949: DvMF_0949 - hypothetical protein (RefSeq), at 1,151,326 to 1,152,135 _0949 DvMF_0950: DvMF_0950 - hypothetical protein (RefSeq), at 1,152,367 to 1,153,191 _0950 DvMF_0951: DvMF_0951 - cell division protein FtsZ (RefSeq), at 1,153,672 to 1,154,961 _0951 Position (kb) 1152 1153 1154Strain fitness (log2 ratio) -2 -1 0 1at 1151.563 kb on - strand, within DvMF_0949at 1151.659 kb on + strand, within DvMF_0949at 1151.896 kb on + strand, within DvMF_0949at 1151.983 kb on - strand, within DvMF_0949at 1152.057 kb on + strandat 1152.150 kb on - strandat 1152.245 kb on - strandat 1153.154 kb on - strandat 1153.544 kb on + strandat 1153.565 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml
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1,151,563 - DvMF_0949 0.29 -1.2
1,151,659 + DvMF_0949 0.41 -2.1
1,151,896 + DvMF_0949 0.70 -2.6
1,151,983 - DvMF_0949 0.81 -1.1
1,152,057 + -0.3
1,152,150 - -0.6
1,152,245 - +0.3
1,153,154 - +0.7
1,153,544 + -0.4
1,153,565 - -0.8

Or see this region's nucleotide sequence