Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0782 and DvMF_0783 are separated by 548 nucleotides DvMF_0783 and DvMF_0784 are separated by 260 nucleotides DvMF_0784 and DvMF_0785 are separated by 217 nucleotides
DvMF_0782: DvMF_0782 - hypothetical protein (RefSeq), at 939,432 to 939,974
_0782
DvMF_0783: DvMF_0783 - Glucose/sorbosone dehydrogenase-like protein (RefSeq), at 940,523 to 941,923
_0783
DvMF_0784: DvMF_0784 - hypothetical protein (RefSeq), at 942,184 to 942,423
_0784
DvMF_0785: DvMF_0785 - hypothetical protein (RefSeq), at 942,641 to 943,018
_0785
Position (kb) 940
941
942 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 940.084 kb on + strand at 940.113 kb on + strand at 940.223 kb on + strand at 940.248 kb on + strand at 940.363 kb on + strand at 940.805 kb on - strand, within DvMF_0783 at 940.810 kb on - strand, within DvMF_0783 at 940.904 kb on + strand, within DvMF_0783 at 940.955 kb on + strand, within DvMF_0783 at 940.992 kb on + strand, within DvMF_0783 at 941.054 kb on - strand, within DvMF_0783 at 941.165 kb on - strand, within DvMF_0783 at 941.241 kb on + strand, within DvMF_0783 at 941.652 kb on - strand, within DvMF_0783 at 941.778 kb on + strand, within DvMF_0783 at 942.190 kb on + strand at 942.368 kb on - strand, within DvMF_0784 at 942.625 kb on + strand at 942.685 kb on - strand, within DvMF_0785
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 940,084 + -1.2 940,113 + -0.6 940,223 + -2.6 940,248 + -0.6 940,363 + +2.1 940,805 - DvMF_0783 0.20 -0.8 940,810 - DvMF_0783 0.20 -0.4 940,904 + DvMF_0783 0.27 -0.7 940,955 + DvMF_0783 0.31 -0.0 940,992 + DvMF_0783 0.33 +0.2 941,054 - DvMF_0783 0.38 -1.6 941,165 - DvMF_0783 0.46 -2.7 941,241 + DvMF_0783 0.51 -1.5 941,652 - DvMF_0783 0.81 -1.3 941,778 + DvMF_0783 0.90 -0.7 942,190 + +0.0 942,368 - DvMF_0784 0.77 -0.9 942,625 + -2.8 942,685 - DvMF_0785 0.12 -1.2
Or see this region's nucleotide sequence