Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0781

Experiment: MoYLS4 with Rifampicin 0.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0780 and DvMF_R0022 are separated by 374 nucleotidesDvMF_R0022 and DvMF_0781 are separated by 448 nucleotidesDvMF_0781 and DvMF_0782 are separated by 346 nucleotides DvMF_0780: DvMF_0780 - response regulator receiver modulated CheB methylesterase (RefSeq), at 936,260 to 937,402 _0780 DvMF_R0022: DvMF_R0022 - tRNA-Pro (RefSeq), at 937,777 to 937,854 _R0022 DvMF_0781: DvMF_0781 - NLP/P60 protein (RefSeq), at 938,303 to 939,085 _0781 DvMF_0782: DvMF_0782 - hypothetical protein (RefSeq), at 939,432 to 939,974 _0782 Position (kb) 938 939 940Strain fitness (log2 ratio) -3 -2 -1 0 1at 937.536 kb on + strandat 937.937 kb on + strandat 938.030 kb on + strandat 938.046 kb on + strandat 938.074 kb on - strandat 938.261 kb on - strandat 938.380 kb on + strandat 938.384 kb on - strand, within DvMF_0781at 938.389 kb on - strand, within DvMF_0781at 938.497 kb on + strand, within DvMF_0781at 938.813 kb on - strand, within DvMF_0781at 938.973 kb on + strand, within DvMF_0781at 939.162 kb on - strandat 939.278 kb on - strandat 939.283 kb on - strandat 939.297 kb on + strandat 940.084 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml
remove
937,536 + -0.5
937,937 + +0.8
938,030 + -3.7
938,046 + -2.9
938,074 - +0.3
938,261 - -0.0
938,380 + -0.3
938,384 - DvMF_0781 0.10 +0.2
938,389 - DvMF_0781 0.11 +1.5
938,497 + DvMF_0781 0.25 -0.5
938,813 - DvMF_0781 0.65 -1.3
938,973 + DvMF_0781 0.86 -0.9
939,162 - -0.8
939,278 - -0.7
939,283 - +0.1
939,297 + -0.4
940,084 + -1.2

Or see this region's nucleotide sequence