Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0714 and DvMF_0715 are separated by 0 nucleotides DvMF_0715 and DvMF_0716 overlap by 11 nucleotides DvMF_0716 and DvMF_0717 are separated by 1 nucleotides DvMF_0717 and DvMF_0718 are separated by 90 nucleotides DvMF_0718 and DvMF_0719 are separated by 2 nucleotides DvMF_0719 and DvMF_0720 overlap by 14 nucleotides
DvMF_0714: DvMF_0714 - bacteriophage DNA transposition B protein (RefSeq), at 868,040 to 868,822
_0714
DvMF_0715: DvMF_0715 - hypothetical protein (RefSeq), at 868,823 to 869,416
_0715
DvMF_0716: DvMF_0716 - regulatory protein, LacI (RefSeq), at 869,406 to 869,735
_0716
DvMF_0717: DvMF_0717 - hypothetical protein (RefSeq), at 869,737 to 870,231
_0717
DvMF_0718: DvMF_0718 - hypothetical protein (RefSeq), at 870,322 to 870,774
_0718
DvMF_0719: DvMF_0719 - hypothetical protein (RefSeq), at 870,777 to 871,001
_0719
DvMF_0720: DvMF_0720 - protein of unknown function DUF1018 (RefSeq), at 870,988 to 871,428
_0720
Position (kb) 869
870
871 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 868.757 kb on - strand at 868.759 kb on + strand at 869.210 kb on - strand, within DvMF_0715 at 869.314 kb on + strand, within DvMF_0715 at 869.322 kb on - strand, within DvMF_0715 at 870.104 kb on - strand, within DvMF_0717 at 870.127 kb on - strand, within DvMF_0717 at 870.394 kb on - strand, within DvMF_0718 at 870.652 kb on - strand, within DvMF_0718 at 870.772 kb on - strand at 870.794 kb on + strand at 871.108 kb on + strand, within DvMF_0720 at 871.185 kb on + strand, within DvMF_0720 at 871.190 kb on + strand, within DvMF_0720
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 868,757 - -0.4 868,759 + -0.9 869,210 - DvMF_0715 0.65 -2.2 869,314 + DvMF_0715 0.83 +0.9 869,322 - DvMF_0715 0.84 -2.8 870,104 - DvMF_0717 0.74 -3.3 870,127 - DvMF_0717 0.79 +0.7 870,394 - DvMF_0718 0.16 -0.1 870,652 - DvMF_0718 0.73 +0.0 870,772 - -0.4 870,794 + -1.9 871,108 + DvMF_0720 0.27 -1.7 871,185 + DvMF_0720 0.45 -0.7 871,190 + DvMF_0720 0.46 -0.1
Or see this region's nucleotide sequence