Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0642 and DvMF_0643 are separated by 604 nucleotides DvMF_0643 and DvMF_0644 are separated by 10 nucleotides DvMF_0644 and DvMF_0645 are separated by 292 nucleotides
DvMF_0642: DvMF_0642 - molybdopterin binding domain protein (RefSeq), at 769,283 to 770,326
_0642
DvMF_0643: DvMF_0643 - formate dehydrogenase, alpha subunit (RefSeq), at 770,931 to 773,969
_0643
DvMF_0644: DvMF_0644 - formate dehydrogenase, beta subunit, putative (RefSeq), at 773,980 to 774,627
_0644
DvMF_0645: DvMF_0645 - formate dehydrogenase accessory protein (RefSeq), at 774,920 to 775,933
_0645
Position (kb) 770
771
772
773
774 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 770.109 kb on + strand, within DvMF_0642 at 770.206 kb on - strand, within DvMF_0642 at 770.206 kb on - strand, within DvMF_0642 at 770.479 kb on + strand at 770.789 kb on + strand at 770.995 kb on - strand at 771.005 kb on - strand at 771.079 kb on - strand at 771.223 kb on - strand at 771.381 kb on - strand, within DvMF_0643 at 771.749 kb on - strand, within DvMF_0643 at 771.997 kb on + strand, within DvMF_0643 at 772.079 kb on + strand, within DvMF_0643 at 772.135 kb on + strand, within DvMF_0643 at 772.137 kb on + strand, within DvMF_0643 at 772.387 kb on - strand, within DvMF_0643 at 772.513 kb on - strand, within DvMF_0643 at 772.536 kb on + strand, within DvMF_0643 at 772.544 kb on - strand, within DvMF_0643 at 772.579 kb on - strand, within DvMF_0643 at 772.601 kb on - strand, within DvMF_0643 at 772.668 kb on - strand, within DvMF_0643 at 772.941 kb on - strand, within DvMF_0643 at 773.257 kb on - strand, within DvMF_0643 at 773.285 kb on + strand, within DvMF_0643 at 773.345 kb on + strand, within DvMF_0643 at 773.419 kb on - strand, within DvMF_0643 at 773.495 kb on + strand, within DvMF_0643 at 773.689 kb on + strand at 773.725 kb on + strand at 773.846 kb on - strand at 774.003 kb on + strand at 774.026 kb on + strand at 774.132 kb on + strand, within DvMF_0644 at 774.164 kb on - strand, within DvMF_0644 at 774.285 kb on + strand, within DvMF_0644 at 774.293 kb on - strand, within DvMF_0644 at 774.742 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 770,109 + DvMF_0642 0.79 -0.5 770,206 - DvMF_0642 0.88 +0.7 770,206 - DvMF_0642 0.88 -0.4 770,479 + -0.9 770,789 + -0.1 770,995 - -1.2 771,005 - +0.3 771,079 - -1.0 771,223 - -4.2 771,381 - DvMF_0643 0.15 -2.6 771,749 - DvMF_0643 0.27 -3.0 771,997 + DvMF_0643 0.35 -0.3 772,079 + DvMF_0643 0.38 -1.2 772,135 + DvMF_0643 0.40 -0.7 772,137 + DvMF_0643 0.40 -0.4 772,387 - DvMF_0643 0.48 -0.8 772,513 - DvMF_0643 0.52 -1.6 772,536 + DvMF_0643 0.53 -2.2 772,544 - DvMF_0643 0.53 -1.3 772,579 - DvMF_0643 0.54 -1.6 772,601 - DvMF_0643 0.55 -1.1 772,668 - DvMF_0643 0.57 +0.7 772,941 - DvMF_0643 0.66 -1.3 773,257 - DvMF_0643 0.77 +0.1 773,285 + DvMF_0643 0.77 +0.1 773,345 + DvMF_0643 0.79 -0.2 773,419 - DvMF_0643 0.82 +0.6 773,495 + DvMF_0643 0.84 +0.2 773,689 + -0.2 773,725 + -0.4 773,846 - -1.1 774,003 + -1.3 774,026 + -1.3 774,132 + DvMF_0644 0.23 -0.3 774,164 - DvMF_0644 0.28 +1.1 774,285 + DvMF_0644 0.47 +0.2 774,293 - DvMF_0644 0.48 -0.4 774,742 + -0.4
Or see this region's nucleotide sequence