Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0587 and DvMF_0588 overlap by 4 nucleotides DvMF_0588 and DvMF_0589 overlap by 4 nucleotides DvMF_0589 and DvMF_0590 are separated by 393 nucleotides
DvMF_0587: DvMF_0587 - hypothetical protein (RefSeq), at 696,310 to 697,458
_0587
DvMF_0588: DvMF_0588 - hypothetical protein (RefSeq), at 697,455 to 698,219
_0588
DvMF_0589: DvMF_0589 - glycosyl transferase, group 2 family protein (RefSeq), at 698,216 to 699,343
_0589
DvMF_0590: DvMF_0590 - ATP-dependent protease, putative (RefSeq), at 699,737 to 702,172
_0590
Position (kb) 698
699
700 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 697.443 kb on - strand at 697.493 kb on + strand at 697.501 kb on - strand at 697.810 kb on - strand, within DvMF_0588 at 697.845 kb on + strand, within DvMF_0588 at 697.979 kb on + strand, within DvMF_0588 at 698.076 kb on - strand, within DvMF_0588 at 698.177 kb on + strand at 698.285 kb on - strand at 698.310 kb on + strand at 698.382 kb on - strand, within DvMF_0589 at 698.506 kb on - strand, within DvMF_0589 at 698.547 kb on - strand, within DvMF_0589 at 698.932 kb on - strand, within DvMF_0589 at 699.128 kb on + strand, within DvMF_0589 at 699.296 kb on + strand at 699.398 kb on - strand at 699.673 kb on + strand at 699.787 kb on - strand at 699.962 kb on - strand at 699.962 kb on - strand at 699.962 kb on - strand at 700.062 kb on - strand, within DvMF_0590 at 700.122 kb on - strand, within DvMF_0590 at 700.216 kb on + strand, within DvMF_0590
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 697,443 - -3.7 697,493 + -0.6 697,501 - -0.8 697,810 - DvMF_0588 0.46 -2.5 697,845 + DvMF_0588 0.51 -2.2 697,979 + DvMF_0588 0.68 -1.3 698,076 - DvMF_0588 0.81 -0.1 698,177 + -0.9 698,285 - -0.6 698,310 + -1.6 698,382 - DvMF_0589 0.15 -0.3 698,506 - DvMF_0589 0.26 -0.6 698,547 - DvMF_0589 0.29 +1.0 698,932 - DvMF_0589 0.63 -0.7 699,128 + DvMF_0589 0.81 -1.7 699,296 + -0.6 699,398 - -2.2 699,673 + -0.8 699,787 - -1.2 699,962 - -0.9 699,962 - -0.6 699,962 - -0.7 700,062 - DvMF_0590 0.13 -0.1 700,122 - DvMF_0590 0.16 -0.5 700,216 + DvMF_0590 0.20 -0.6
Or see this region's nucleotide sequence