Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0546 and DvMF_0547 are separated by 401 nucleotides DvMF_0547 and DvMF_0548 are separated by 96 nucleotides
DvMF_0546: DvMF_0546 - Glutamate synthase (NADPH) (RefSeq), at 643,014 to 644,537
_0546
DvMF_0547: DvMF_0547 - putative carboxylesterase (RefSeq), at 644,939 to 645,748
_0547
DvMF_0548: DvMF_0548 - Guanine deaminase (RefSeq), at 645,845 to 647,167
_0548
Position (kb) 644
645
646 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 644.399 kb on - strand at 644.424 kb on + strand at 644.541 kb on + strand at 644.610 kb on - strand at 644.661 kb on + strand at 645.050 kb on - strand, within DvMF_0547 at 645.099 kb on + strand, within DvMF_0547 at 645.172 kb on - strand, within DvMF_0547 at 645.196 kb on + strand, within DvMF_0547 at 645.287 kb on + strand, within DvMF_0547 at 645.288 kb on - strand, within DvMF_0547 at 645.430 kb on + strand, within DvMF_0547 at 645.512 kb on - strand, within DvMF_0547 at 645.558 kb on + strand, within DvMF_0547 at 645.749 kb on + strand at 645.853 kb on + strand at 645.872 kb on - strand at 645.981 kb on - strand, within DvMF_0548 at 646.064 kb on + strand, within DvMF_0548 at 646.064 kb on + strand, within DvMF_0548 at 646.064 kb on + strand, within DvMF_0548 at 646.072 kb on - strand, within DvMF_0548 at 646.178 kb on + strand, within DvMF_0548 at 646.402 kb on + strand, within DvMF_0548 at 646.429 kb on - strand, within DvMF_0548 at 646.429 kb on - strand, within DvMF_0548 at 646.431 kb on - strand, within DvMF_0548 at 646.661 kb on + strand, within DvMF_0548
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 644,399 - +0.8 644,424 + +0.6 644,541 + -1.4 644,610 - -0.5 644,661 + +0.2 645,050 - DvMF_0547 0.14 -1.8 645,099 + DvMF_0547 0.20 -4.4 645,172 - DvMF_0547 0.29 -2.1 645,196 + DvMF_0547 0.32 -1.4 645,287 + DvMF_0547 0.43 -0.9 645,288 - DvMF_0547 0.43 -2.5 645,430 + DvMF_0547 0.61 -1.9 645,512 - DvMF_0547 0.71 -0.9 645,558 + DvMF_0547 0.76 -2.2 645,749 + -1.5 645,853 + +0.2 645,872 - +0.7 645,981 - DvMF_0548 0.10 -2.1 646,064 + DvMF_0548 0.17 -1.0 646,064 + DvMF_0548 0.17 -0.9 646,064 + DvMF_0548 0.17 -4.5 646,072 - DvMF_0548 0.17 -0.4 646,178 + DvMF_0548 0.25 +1.1 646,402 + DvMF_0548 0.42 -2.5 646,429 - DvMF_0548 0.44 -1.7 646,429 - DvMF_0548 0.44 -1.4 646,431 - DvMF_0548 0.44 -1.8 646,661 + DvMF_0548 0.62 -1.6
Or see this region's nucleotide sequence