Experiment: MoYLS4 with Rifampicin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0516 and DvMF_0517 are separated by 28 nucleotides DvMF_0517 and DvMF_0518 are separated by 190 nucleotides
DvMF_0516: DvMF_0516 - aminotransferase class-III (RefSeq), at 609,138 to 610,517
_0516
DvMF_0517: DvMF_0517 - alanine dehydrogenase (RefSeq), at 610,546 to 611,655
_0517
DvMF_0518: DvMF_0518 - ABC transporter related (RefSeq), at 611,846 to 612,601
_0518
Position (kb) 610
611
612 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 609.656 kb on - strand, within DvMF_0516 at 609.865 kb on - strand, within DvMF_0516 at 609.995 kb on + strand, within DvMF_0516 at 610.055 kb on + strand, within DvMF_0516 at 610.063 kb on - strand, within DvMF_0516 at 610.193 kb on + strand, within DvMF_0516 at 610.233 kb on - strand, within DvMF_0516 at 610.252 kb on + strand, within DvMF_0516 at 610.283 kb on - strand, within DvMF_0516 at 610.334 kb on + strand, within DvMF_0516 at 610.475 kb on + strand at 610.514 kb on - strand at 610.528 kb on - strand at 611.311 kb on - strand, within DvMF_0517 at 611.463 kb on + strand, within DvMF_0517 at 611.489 kb on - strand, within DvMF_0517 at 611.503 kb on + strand, within DvMF_0517 at 611.504 kb on - strand, within DvMF_0517 at 611.566 kb on + strand at 611.647 kb on + strand at 611.687 kb on - strand at 611.788 kb on + strand at 611.934 kb on + strand, within DvMF_0518 at 611.944 kb on + strand, within DvMF_0518 at 612.021 kb on - strand, within DvMF_0518 at 612.069 kb on + strand, within DvMF_0518 at 612.234 kb on + strand, within DvMF_0518 at 612.449 kb on + strand, within DvMF_0518 at 612.476 kb on - strand, within DvMF_0518
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml remove 609,656 - DvMF_0516 0.38 -0.3 609,865 - DvMF_0516 0.53 -0.9 609,995 + DvMF_0516 0.62 -1.4 610,055 + DvMF_0516 0.66 -0.8 610,063 - DvMF_0516 0.67 -2.8 610,193 + DvMF_0516 0.76 -2.5 610,233 - DvMF_0516 0.79 -1.9 610,252 + DvMF_0516 0.81 -0.4 610,283 - DvMF_0516 0.83 -3.4 610,334 + DvMF_0516 0.87 -3.0 610,475 + -2.9 610,514 - -0.5 610,528 - -0.5 611,311 - DvMF_0517 0.69 -2.6 611,463 + DvMF_0517 0.83 +0.5 611,489 - DvMF_0517 0.85 -1.3 611,503 + DvMF_0517 0.86 -0.7 611,504 - DvMF_0517 0.86 -0.3 611,566 + +0.3 611,647 + -0.2 611,687 - +0.2 611,788 + -2.4 611,934 + DvMF_0518 0.12 -2.0 611,944 + DvMF_0518 0.13 -2.3 612,021 - DvMF_0518 0.23 -2.1 612,069 + DvMF_0518 0.29 -0.9 612,234 + DvMF_0518 0.51 -2.2 612,449 + DvMF_0518 0.80 -4.9 612,476 - DvMF_0518 0.83 -1.1
Or see this region's nucleotide sequence