Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0505

Experiment: MoYLS4 with Rifampicin 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0504 and DvMF_0505 are separated by 171 nucleotidesDvMF_0505 and DvMF_0506 are separated by 450 nucleotides DvMF_0504: DvMF_0504 - hypothetical protein (RefSeq), at 591,765 to 592,781 _0504 DvMF_0505: DvMF_0505 - hypothetical protein (RefSeq), at 592,953 to 594,203 _0505 DvMF_0506: DvMF_0506 - PGAP1 family protein (RefSeq), at 594,654 to 595,739 _0506 Position (kb) 592 593 594 595Strain fitness (log2 ratio) -3 -2 -1 0 1at 592.890 kb on + strandat 593.016 kb on - strandat 593.305 kb on - strand, within DvMF_0505at 593.505 kb on + strand, within DvMF_0505at 593.919 kb on - strand, within DvMF_0505at 593.943 kb on + strand, within DvMF_0505at 593.950 kb on - strand, within DvMF_0505at 594.066 kb on + strand, within DvMF_0505at 594.098 kb on + strandat 594.329 kb on + strandat 594.503 kb on + strandat 594.511 kb on - strandat 594.573 kb on + strandat 594.583 kb on + strandat 594.583 kb on + strandat 594.999 kb on - strand, within DvMF_0506

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml
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592,890 + -1.0
593,016 - +1.0
593,305 - DvMF_0505 0.28 -0.4
593,505 + DvMF_0505 0.44 -0.4
593,919 - DvMF_0505 0.77 -0.1
593,943 + DvMF_0505 0.79 -2.0
593,950 - DvMF_0505 0.80 -2.1
594,066 + DvMF_0505 0.89 -0.8
594,098 + -0.6
594,329 + -0.8
594,503 + -1.0
594,511 - -0.4
594,573 + -3.4
594,583 + -0.6
594,583 + -0.3
594,999 - DvMF_0506 0.32 +0.7

Or see this region's nucleotide sequence