Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0137

Experiment: MoYLS4 with Rifampicin 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0136 and DvMF_0137 are separated by 247 nucleotidesDvMF_0137 and DvMF_0138 are separated by 262 nucleotides DvMF_0136: DvMF_0136 - hypothetical protein (RefSeq), at 151,254 to 152,498 _0136 DvMF_0137: DvMF_0137 - UDP-glucose 4-epimerase (RefSeq), at 152,746 to 153,816 _0137 DvMF_0138: DvMF_0138 - lipid-A-disaccharide synthase (RefSeq), at 154,079 to 155,311 _0138 Position (kb) 152 153 154Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 151.758 kb on - strand, within DvMF_0136at 151.776 kb on - strand, within DvMF_0136at 151.863 kb on - strand, within DvMF_0136at 152.025 kb on + strand, within DvMF_0136at 152.119 kb on - strand, within DvMF_0136at 152.129 kb on - strand, within DvMF_0136at 152.406 kb on - strandat 152.732 kb on + strandat 152.775 kb on + strandat 152.793 kb on - strandat 152.867 kb on - strand, within DvMF_0137at 153.031 kb on + strand, within DvMF_0137at 153.142 kb on - strand, within DvMF_0137at 153.364 kb on + strand, within DvMF_0137at 153.421 kb on - strand, within DvMF_0137at 153.599 kb on + strand, within DvMF_0137at 153.662 kb on + strand, within DvMF_0137at 153.668 kb on - strand, within DvMF_0137at 153.815 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.4 mg/ml
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151,758 - DvMF_0136 0.40 -0.9
151,776 - DvMF_0136 0.42 -0.1
151,863 - DvMF_0136 0.49 -0.2
152,025 + DvMF_0136 0.62 +0.0
152,119 - DvMF_0136 0.69 -1.3
152,129 - DvMF_0136 0.70 -0.5
152,406 - -0.4
152,732 + -0.6
152,775 + +1.4
152,793 - +5.2
152,867 - DvMF_0137 0.11 +2.8
153,031 + DvMF_0137 0.27 -0.4
153,142 - DvMF_0137 0.37 +1.3
153,364 + DvMF_0137 0.58 -2.1
153,421 - DvMF_0137 0.63 -0.7
153,599 + DvMF_0137 0.80 -0.7
153,662 + DvMF_0137 0.86 +0.7
153,668 - DvMF_0137 0.86 +0.3
153,815 - +1.2

Or see this region's nucleotide sequence