Strain Fitness in Shewanella loihica PV-4 around Shew_3319
Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.0625 vol% |
|---|---|---|---|---|---|
| remove | |||||
| 3,957,681 | - | Shew_3318 | 0.36 | +0.1 | |
| 3,957,681 | + | Shew_3318 | 0.36 | +0.3 | |
| 3,957,758 | + | Shew_3318 | 0.42 | -0.1 | |
| 3,958,039 | - | Shew_3318 | 0.64 | +0.3 | |
| 3,958,046 | + | Shew_3318 | 0.65 | -0.2 | |
| 3,958,171 | + | Shew_3318 | 0.75 | -0.0 | |
| 3,958,383 | + | +0.2 | |||
| 3,958,644 | - | Shew_3319 | 0.15 | +0.4 | |
| 3,958,934 | + | -0.6 | |||
| 3,959,436 | + | +0.6 | |||
| 3,959,444 | - | +0.4 | |||
| 3,959,506 | + | -0.3 | |||
| 3,959,680 | - | Shew_3320 | 0.18 | -0.2 | |
| 3,959,837 | + | Shew_3320 | 0.28 | -0.0 |
Or see this region's nucleotide sequence